View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_33 (Length: 268)
Name: NF11473_low_33
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_33 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 47917 - 47661
Alignment:
| Q |
1 |
atgtcatcgcaatggcacccgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgannnnnnngccttggtactcc |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47917 |
atgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactcc |
47818 |
T |
|
| Q |
101 |
atgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
200 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47817 |
atgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
47718 |
T |
|
| Q |
201 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47717 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
47661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 60456 - 60200
Alignment:
| Q |
1 |
atgtcatcgcaatggcacccgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgannnnnnngccttggtactcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
60456 |
atgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactcc |
60357 |
T |
|
| Q |
101 |
atgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
200 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60356 |
atgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
60257 |
T |
|
| Q |
201 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
60256 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
60200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 72575 - 72319
Alignment:
| Q |
1 |
atgtcatcgcaatggcacccgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgannnnnnngccttggtactcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
72575 |
atgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactcc |
72476 |
T |
|
| Q |
101 |
atgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
200 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
72475 |
atgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
72376 |
T |
|
| Q |
201 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72375 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
72319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 18691266 - 18691010
Alignment:
| Q |
1 |
atgtcatcgcaatggcacccgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgannnnnnngccttggtactcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18691266 |
atgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactcc |
18691167 |
T |
|
| Q |
101 |
atgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
200 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691166 |
atgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
18691067 |
T |
|
| Q |
201 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691066 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
18691010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 15699005 - 15698749
Alignment:
| Q |
1 |
atgtcatcgcaatggcacccgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgannnnnnngccttggtactcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
15699005 |
atgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactcc |
15698906 |
T |
|
| Q |
101 |
atgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
200 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15698905 |
atgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
15698806 |
T |
|
| Q |
201 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15698805 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
15698749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 15711544 - 15711288
Alignment:
| Q |
1 |
atgtcatcgcaatggcacccgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgannnnnnngccttggtactcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15711544 |
atgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactcc |
15711445 |
T |
|
| Q |
101 |
atgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
200 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15711444 |
atgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
15711345 |
T |
|
| Q |
201 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15711344 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
15711288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 15724022 - 15723766
Alignment:
| Q |
1 |
atgtcatcgcaatggcacccgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgannnnnnngccttggtactcc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15724022 |
atgtcatcgcaatggcactcgtcggtgctgctgctatcctttgagtactcttggtattcattgatgagctttttgatcgattgtttcgccttggtactcc |
15723923 |
T |
|
| Q |
101 |
atgcttcaatctctttgggatcgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
200 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15723922 |
atgattcaatctctttgggattgaatggattttcagcgccaaaccctccaatgcttattatcaccttaacattcttatgatctttcttcagcttcgccac |
15723823 |
T |
|
| Q |
201 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15723822 |
ttttgctggactgaaattattaaaattccaagtccgatagaattctcccttgccttt |
15723766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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