View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_38 (Length: 252)
Name: NF11473_low_38
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 33221951 - 33222196
Alignment:
| Q |
3 |
agtcttgtatcaaaacttactattttgtgtttcttgcttgcattagatgctacacataattggcatctccaacaattgaatgtcaaaaatgcatttattc |
102 |
Q |
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| T |
33221951 |
agtcatgtagcaaaacttactattgtgtgtttgttgcttgcattagatgctacacataattggcatctccaacaattgaatgtcaaaaatgcatttattc |
33222050 |
T |
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| Q |
103 |
atggaggccttgataaggatgtaagcatgaagcttcctcctagtgtttcatctttcaaacctaatcaagtttctaaattgctcaaatctctttagggttt |
202 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33222051 |
atggagaccttgataaggatgtaagcatgaagcttcctcctagtgtttcatctttcaaacctaatcaagtttctaaattgctcaaatctctttagggttt |
33222150 |
T |
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| Q |
203 |
gaagtaagccaaccaccaatggttttccaaattatctctgcttctc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
33222151 |
gaagtaagccaaccaccaatggttttccaaattatcactgtttctc |
33222196 |
T |
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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 238
Target Start/End: Original strand, 33110402 - 33110602
Alignment:
| Q |
39 |
cttgcattagatgctacacataattggcatctccaacaattgaatgtcaaaaatgcatttattcatggaggccttgataaggatgtaagcatgaagcttc |
138 |
Q |
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||||| |||| ||||||||||||||||||||||||| || || ||||||| ||||| || ||||||||| ||||||| | ||||| ||||||||||| |
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| T |
33110402 |
cttgctttagctgctacacataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttc |
33110501 |
T |
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| Q |
139 |
ctcctagtgtttcatctttcaaacctaatcaagtttctaaattgc-tcaaatctctttagggtttgaagtaagccaaccaccaatggttttccaaattat |
237 |
Q |
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|||| ||||| |||| |||||| |||||||||| |||| | | | ||| ||||||| |||||||| |||| ||| | |||||| | |||||||||| |
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| T |
33110502 |
atcctggtgttcattcttccaaaccaaatcaagtttgtaaactactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattat |
33110601 |
T |
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| Q |
238 |
c |
238 |
Q |
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| T |
33110602 |
c |
33110602 |
T |
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