View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_44 (Length: 247)
Name: NF11473_low_44
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 1965477 - 1965242
Alignment:
| Q |
5 |
caggttcgatcaagtcaccgtctcaagctcaaggccgaaaagaaccatgagcttatacttctagaaggcgatctcggtcattatttggatttcgagcaat |
104 |
Q |
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| T |
1965477 |
caggttcgatcaagtcaccatctcaagctcaaggccgaaaagaaccatgagcttatacttctagaagacgatctcggtcattatttggatttcgagcaat |
1965378 |
T |
|
| Q |
105 |
tttcaagtactagtccacaatggacgacccatcaatttaaactaagtaaaacaatatgaaacaaaaaagagaaataatagaactaacttggtctaatttt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1965377 |
tttcaagtactagtccacaatggacgacccatcaatttaaactaagtaaaacattatgaaacaaaaaagagaaataatagaactaacttggtctaatttt |
1965278 |
T |
|
| Q |
205 |
tcaaaagagtcggcccttctaggaacccaacctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1965277 |
tcaaaagagtcggcccttctaggaacccaacctttg |
1965242 |
T |
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