View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_47 (Length: 240)
Name: NF11473_low_47
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 33221788 - 33221942
Alignment:
| Q |
75 |
aacttggattttgaatgatttgcctgatggtaaagtacctattggttgaagatgggtttacaaaatcaaataccatgctaatggcaccatagaacaatac |
174 |
Q |
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| T |
33221788 |
aacttggattttgaatgatgtgcctgatggtaaagtacctattggttgaagatgggtttacaaaatcaaataccatgctaatggctccatagaacaatac |
33221887 |
T |
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| Q |
175 |
aaggcttgtttggtgtcaaagtgctacactcaacaagaatgagtgaactattttg |
229 |
Q |
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| T |
33221888 |
aaggcttgtttggtgtcaaagggctacactctgcaagaatgagtgaactattttg |
33221942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 33221529 - 33221579
Alignment:
| Q |
18 |
tcatagagctcctggctatcttcaagatttccattgcaccattcgcaaatc |
68 |
Q |
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| T |
33221529 |
tcatagagctcctggctatcttcaagatttccattgcaccattggcaaatc |
33221579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 33110205 - 33110365
Alignment:
| Q |
75 |
aacttggattttgaatgatttgcctgatggtaaagtacctattggttgaagatgggtttacaaaatcaaataccatgctaatggcaccatagaacaatac |
174 |
Q |
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|||||||||||||| ||||||||||| |||||| ||||||||| |||| |||||||| |||||||||||||| |||| |||||| | |||||||||||| |
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| T |
33110205 |
aacttggattttgactgatttgcctgctggtaaggtacctattagttgcagatgggtctacaaaatcaaatatcatgttaatggttcaatagaacaatac |
33110304 |
T |
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| Q |
175 |
aaggcttgtttggtgtcaaagtgctacactcaacaagaatgagtgaactattttggtactt |
235 |
Q |
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| T |
33110305 |
aaggctcggttggcagcagagggttacactcaacaagaaggagtgaattattttgatactt |
33110365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 19606941 - 19606888
Alignment:
| Q |
111 |
acctattggttgaagatgggtttacaaaatcaaataccatgctaatggcaccat |
164 |
Q |
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| T |
19606941 |
acctatcggttgtaaatgggtctataaaatcaaatatcatgctaatggcaccat |
19606888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 1223492 - 1223435
Alignment:
| Q |
111 |
acctattggttgaagatgggtttacaaaatcaaataccatgctaatggcaccatagaa |
168 |
Q |
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| T |
1223492 |
acctattggttgaaaatgggtctataaaattaaatatcatgctaatggcaccgtagaa |
1223435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 42778282 - 42778201
Alignment:
| Q |
75 |
aacttggattttgaatgatttgcctgatggtaaagtacctattggttgaagatgggtttacaaaatcaaataccatgctaat |
156 |
Q |
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|||||||||||||| ||||||||| |||||| ||| ||||| |||| |||| | ||||||| ||||||||||||| |||| |
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| T |
42778282 |
aacttggattttgagagatttgccttctggtaaggtatctattagttgtagatagatttacaagatcaaataccatgttaat |
42778201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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