View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_49 (Length: 240)
Name: NF11473_low_49
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 4843033 - 4843128
Alignment:
| Q |
6 |
attatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaccttaaaattttcaagtttttcaaatgttgaacat |
101 |
Q |
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| T |
4843033 |
attatttatgtttgatagtattgataccttcaattgagcccttcatttgattatcgcttaaccttaacattttcaagtttttcaaatgttgaacat |
4843128 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 5172467 - 5172378
Alignment:
| Q |
133 |
gtacatatttagagatataatattcaataaatctgtaagaactaagaaatttaaagaagaggccttttgtgtcagagctgattgacatgga |
223 |
Q |
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| T |
5172467 |
gtacatatttagagatataatattcaataaatctgtaagaactaagaaatttaaagaagaggcc-tttgtgtcagagctgattgacatgga |
5172378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 5172589 - 5172494
Alignment:
| Q |
6 |
attatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaccttaaaattttcaagtttttcaaatgttgaacat |
101 |
Q |
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| T |
5172589 |
attatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaacttaacattttcaattttttcaagtgttgaacat |
5172494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 4843152 - 4843241
Alignment:
| Q |
133 |
gtacatatttagagatataatattcaataaatctgtaagaactaagaaatttaaagaagaggccttttgtgtcagagctgattgacatgga |
223 |
Q |
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| T |
4843152 |
gtacatagttagagatataatattcaataaatctgtaagaactaagaaatttaaagaagaggcc-tttgtgtcggagctgattgacatgga |
4843241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 5159603 - 5159508
Alignment:
| Q |
6 |
attatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaccttaaaattttcaagtttttcaaatgttgaacat |
101 |
Q |
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||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
5159603 |
attatttgtgtttggtagtattcataccttcaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaacat |
5159508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 5181838 - 5181743
Alignment:
| Q |
6 |
attatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaccttaaaattttcaagtttttcaaatgttgaacat |
101 |
Q |
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| T |
5181838 |
attatttgtgtttggtagtattgataccttcaattgagccgttcatttgattatttcttaaacttaacattttcaagtttttcaaatgttgaacat |
5181743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 5195236 - 5195141
Alignment:
| Q |
6 |
attatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaccttaaaattttcaagtttttcaaatgttgaacat |
101 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||| ||||||||||||||||||| |
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| T |
5195236 |
attatttgtgtttggtagtattgataccttcaattgagccgttcatttgattatcgtttaaacttaacattttcaaatttttcaaatgttgaacat |
5195141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 5212816 - 5212720
Alignment:
| Q |
5 |
cattatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaccttaaaattttcaagtttttcaaatgttgaacat |
101 |
Q |
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|||||||| |||||| || |||| |||||||||| |||||||||||||||||| | || ||| |||| |||||||||||| ||||||||||||||| |
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| T |
5212816 |
cattatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcataaacttagcattttcaagtttctcaaatgttgaacat |
5212720 |
T |
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