View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11473_low_5 (Length: 488)

Name: NF11473_low_5
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11473_low_5
NF11473_low_5
[»] chr2 (10 HSPs)
chr2 (180-471)||(18929235-18929526)
chr2 (180-469)||(26650839-26651130)
chr2 (180-463)||(17402729-17403013)
chr2 (235-450)||(25520385-25520601)
chr2 (235-419)||(31404020-31404205)
chr2 (190-307)||(19878972-19879090)
chr2 (235-419)||(24543870-24544054)
chr2 (235-344)||(29891239-29891348)
chr2 (260-403)||(20478255-20478396)
chr2 (235-367)||(28760593-28760724)
[»] chr7 (13 HSPs)
chr7 (184-469)||(20145813-20146098)
chr7 (180-467)||(2546914-2547198)
chr7 (180-451)||(14987006-14987278)
chr7 (180-451)||(15416617-15416889)
chr7 (235-463)||(17600539-17600766)
chr7 (180-429)||(24832402-24832657)
chr7 (235-469)||(3743380-3743620)
chr7 (235-422)||(4173426-4173615)
chr7 (235-346)||(10649207-10649318)
chr7 (286-345)||(5531725-5531784)
chr7 (286-403)||(18046386-18046501)
chr7 (358-403)||(14961170-14961215)
chr7 (358-403)||(15390642-15390687)
[»] chr8 (16 HSPs)
chr8 (180-469)||(28371034-28371324)
chr8 (180-464)||(9218079-9218367)
chr8 (236-419)||(9286315-9286498)
chr8 (340-466)||(10660970-10661095)
chr8 (235-378)||(23540207-23540351)
chr8 (235-381)||(16600591-16600737)
chr8 (185-347)||(10661748-10661911)
chr8 (266-408)||(13110204-13110345)
chr8 (235-311)||(24577332-24577408)
chr8 (268-408)||(18672125-18672261)
chr8 (235-403)||(25095053-25095223)
chr8 (331-378)||(26136195-26136242)
chr8 (313-403)||(22713661-22713751)
chr8 (235-403)||(27123570-27123736)
chr8 (361-403)||(9006931-9006973)
chr8 (348-404)||(24680835-24680890)
[»] chr5 (16 HSPs)
chr5 (180-443)||(19217915-19218177)
chr5 (180-429)||(20064397-20064653)
chr5 (182-429)||(20060802-20061056)
chr5 (180-378)||(20713228-20713426)
chr5 (180-378)||(23210042-23210240)
chr5 (184-429)||(20058571-20058824)
chr5 (187-347)||(23379314-23379474)
chr5 (180-359)||(25951334-25951513)
chr5 (235-403)||(17167249-17167417)
chr5 (247-403)||(19923956-19924112)
chr5 (286-419)||(24878356-24878489)
chr5 (247-403)||(19926683-19926839)
chr5 (265-403)||(17987482-17987619)
chr5 (235-294)||(21165282-21165342)
chr5 (436-467)||(24878288-24878319)
chr5 (391-423)||(25951260-25951292)
[»] chr3 (16 HSPs)
chr3 (184-462)||(24698999-24699275)
chr3 (181-469)||(15686859-15687148)
chr3 (235-463)||(26010836-26011067)
chr3 (235-450)||(13428700-13428914)
chr3 (235-442)||(4769742-4769949)
chr3 (235-467)||(4765677-4765916)
chr3 (180-378)||(7148790-7148988)
chr3 (235-469)||(4832504-4832740)
chr3 (180-386)||(9033415-9033622)
chr3 (180-375)||(29614529-29614724)
chr3 (235-413)||(23378488-23378668)
chr3 (238-378)||(16242928-16243069)
chr3 (286-409)||(27304424-27304547)
chr3 (361-403)||(13409834-13409876)
chr3 (335-409)||(8737234-8737308)
chr3 (335-409)||(9089472-9089546)
[»] chr6 (12 HSPs)
chr6 (238-469)||(22397545-22397777)
chr6 (180-378)||(16177304-16177502)
chr6 (260-460)||(17524797-17524998)
chr6 (182-378)||(1177150-1177349)
chr6 (180-374)||(15830026-15830220)
chr6 (238-403)||(17947842-17948007)
chr6 (266-419)||(14762938-14763090)
chr6 (286-419)||(18713709-18713842)
chr6 (180-429)||(31126082-31126351)
chr6 (361-403)||(25945847-25945889)
chr6 (316-417)||(28712360-28712461)
chr6 (316-367)||(13002854-13002906)
[»] chr4 (7 HSPs)
chr4 (198-469)||(11361595-11361866)
chr4 (180-462)||(9409083-9409370)
chr4 (237-419)||(16675086-16675269)
chr4 (316-378)||(5358040-5358102)
chr4 (238-336)||(8140832-8140930)
chr4 (235-403)||(4697470-4697638)
chr4 (361-403)||(18558473-18558515)
[»] chr1 (12 HSPs)
chr1 (180-424)||(20146169-20146420)
chr1 (235-443)||(11013817-11014027)
chr1 (235-413)||(33103021-33103201)
chr1 (247-419)||(36571655-36571826)
chr1 (249-419)||(22607834-22608003)
chr1 (235-400)||(20150422-20150588)
chr1 (235-375)||(13202052-13202192)
chr1 (238-403)||(17615274-17615439)
chr1 (286-376)||(22620063-22620153)
chr1 (235-298)||(13232737-13232801)
chr1 (347-419)||(20866221-20866293)
chr1 (361-397)||(20886571-20886607)
[»] scaffold0555 (1 HSPs)
scaffold0555 (180-424)||(5599-5851)
[»] scaffold0264 (1 HSPs)
scaffold0264 (183-469)||(20793-21077)
[»] scaffold0016 (1 HSPs)
scaffold0016 (187-347)||(12991-13151)
[»] scaffold0337 (2 HSPs)
scaffold0337 (247-419)||(17221-17392)
scaffold0337 (260-419)||(4546-4703)
[»] scaffold0002 (1 HSPs)
scaffold0002 (235-399)||(374113-374275)
[»] scaffold0142 (1 HSPs)
scaffold0142 (235-388)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (235-371)||(859-996)
[»] scaffold0795 (1 HSPs)
scaffold0795 (181-227)||(5989-6035)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 180 - 471
Target Start/End: Complemental strand, 18929526 - 18929235
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| | ||| || |||||||  ||||||||| ||  |||| |||| |||||||||    
T  18929526 tctacatggaaggagtgttgatcgtgggattagtttctttccaagttattttctatgcataaatagtagttttccaaagggaaaatgggttgcaaatcac 18929427  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    ||||| | |||||||||||| |||||||||||| | ||||||| | ||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  18929426 ctatatagaattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaaccacctttatttttaatgca 18929327  T
Q  379 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccacagg 471  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||    
T  18929326 ttgtattttacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacct-ttttatgtcgaaatacgccacagg 18929235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 180 - 469
Target Start/End: Complemental strand, 26651130 - 26650839
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-aaaacgggtcgcaaatca 277  Q
    ||||||||||| ||||| | || |||||||| ||||||||| | |||| | | || ||||||||||||||||||||||||  ||||| ||||||||||||    
T  26651130 tctacatggaatgagtgctaatcgtgggattggtttctttcta-gttatttttctatgtataaataagagttttccatagggaaaacaggtcgcaaatca 26651032  T
Q  278 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 377  Q
    |||||||| |||||||||||| |||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |    
T  26651031 cctatacagaattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttataatcc 26650932  T
Q  378 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaa-ccttttttctgtcgaaagacgccaca 469  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26650931 attgtattttacctttcctttaagtttctgcaatttaaacttcatgtctttactttgcttttaaaacccttttttctgtcgaaagaagccaca 26650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 180 - 463
Target Start/End: Complemental strand, 17403013 - 17402729
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccata-gaaaaacgggtcgcaaatca 277  Q
    ||||| |||||||||||||||| ||||||||    | |||||| |||| | |||| ||||||||||  |||| |||||| | ||||| ||||||||||||    
T  17403013 tctacgtggaaggagtgttgatcgtgggattatgctttttcca-gttattttcttatgtataaatagtagttctccataaggaaaacaggtcgcaaatca 17402915  T
Q  278 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 377  Q
    |||||| | |||||||||||| || |||||||||  |||||||||| ||| ||||||||||||||||||||||||||  ||| |||||||||||||||||    
T  17402914 cctatatagaattctaaaacactctaagtaccggcacgagagaaaaaagttataaagaatgtatgtaaaggatttgtataaccacctttatttttaatgc 17402815  T
Q  378 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagac 463  Q
    |||||||||||  ||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||||||    
T  17402814 attgtattttatatttcctttaagtttctgcaatttaaacttattgcctttactttgcttttaaaaccttttttttgttgaaagac 17402729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 235 - 450
Target Start/End: Original strand, 25520385 - 25520601
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||| ||||||||||||  ||||||||| |||||||||||||||| |||| ||||||| |||||||  ||| ||||||||||||||| ||| |    
T  25520385 tgtataaataatagttttccatagggaaaacgggttgcaaatcacctatacagaattataaaacactcgaagtgacggcgcgagagaaaagagtcataca 25520484  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 433  Q
     |||||||||||||| ||||||||||  ||||||||||||||||| |||| |||| |||| |||||| || ||||||||| ||||||||||||| |||||    
T  25520485 taatgtatgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtttatcttttctttaactttctgcaattttaacttaatgcctttacttt 25520584  T
Q  434 gcttttaaaaccttttt 450  Q
    |||||||||||||||||    
T  25520585 gcttttaaaaccttttt 25520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 419
Target Start/End: Original strand, 31404020 - 31404205
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  |||||||||||   |||| |||||||||||||| |||  ||| |||||||||| |||||||||||| ||||||||||||||| ||| |    
T  31404020 tgtataaatagtagttttccatattgaaaatgggtcgcaaatcacttattgaaa-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 31404118  T
Q  334 gaatgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 419  Q
    |||||||||| ||| |||||||||||| ||||||  |||||||||| || | ||||||||| ||||||||| ||||| |||||||||    
T  31404119 gaatgtatgtaaaatgatttgtcgaaccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 190 - 307
Target Start/End: Complemental strand, 19879090 - 19878972
Alignment:
Q  190 aggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaa 288  Q
    |||||||||||| |||||||| |||||||||||| ||| | ||| |||| |||||  |||||||||||| ||||||||||||||||||||||||||| ||    
T  19879090 aggagtgttgatcgtgggattagtttctttccaacttattttctatgtaaaaatagtagttttccataggaaaaacgggtcgcaaatcacctatacagaa 19878991  T
Q  289 ttctaaaacattcgaagta 307  Q
    |||||||||| | ||||||    
T  19878990 ttctaaaacactagaagta 19878972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 235 - 419
Target Start/End: Complemental strand, 24544054 - 24543870
Alignment:
Q  235 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  |||||||||||| ||||||||||| |||||||| |||| ||| ||  | |||| |||||||| ||| ||||||||||||| | ||| |    
T  24544054 tgtataaatagtagttttccataggaaaaacgggtcacaaatcacttatagaaatttg-acaacactcgaagtatcggcgcgagagaaaagatttataca 24543956  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 419  Q
     ||| |||||||||||||| | |||| |||||||||||||||||| || | ||||  ||||||  |||||  |||||||| |||||    
T  24543955 taatatatgtaaaggatttctggaaccacctttatttttaatgcaatgcaatttatttttcctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 344
Target Start/End: Original strand, 29891239 - 29891348
Alignment:
Q  235 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  |||| |||||| ||||||||||||||| ||||| |||| ||| || ||||||| || ||||| ||| ||||||||||||| | ||| |    
T  29891239 tgtataaatagtagttgtccatatgaaaaacgggtcgcagatcacttatagaaa-ttataaaacactcaaagtatcggcgcgagagaaaagatttataca 29891337  T
Q  334 gaatgtatgta 344  Q
     ||||||||||    
T  29891338 aaatgtatgta 29891348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 403
Target Start/End: Original strand, 20478255 - 20478396
Alignment:
Q  260 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaa-ggatttgtcgaa 358  Q
    |||| |||||||||||||  |||||| ||||||| |||| || || |||||| ||||| |||| |||| ||| ||||||||||||||  ||||||| | |    
T  20478255 aaaatgggtcgcaaatca--tatacataattctacaacactcaaactaccggcgcgagggaaacgagttatacagaatgtatgtaaactgatttgtag-a 20478351  T
Q  359 ctacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    | ||||||| |||||||| |||| ||||    |||||||||||||    
T  20478352 ccacctttaattttaatgaattgcatttatgttttcctttaagtt 20478396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 367
Target Start/End: Original strand, 28760593 - 28760724
Alignment:
Q  235 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggag-cgagagaaaagagtgataa 332  Q
    |||||||||||||||||| |||| |||||||  | |||||||||  ||||  ||||||||  ||  |||||||||||| | | |||||||||||| |||     
T  28760593 tgtataaataagagtttttcatatgaaaaacaagacgcaaatcatttata--aaattctagcac--tcgaagtaccggcgtctagagaaaagagtcatat 28760688  T
Q  333 agaatgtatgtaaa-ggatttgtcgaactaccttta 367  Q
    ||||||||||||||  |||||||||||| |||||||    
T  28760689 agaatgtatgtaaactgatttgtcgaaccaccttta 28760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 184 - 469
Target Start/End: Complemental strand, 20146098 - 20145813
Alignment:
Q  184 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctat 282  Q
    ||||||||||||| |||| |||||||| |||||||||||||||| |  || ||||||||||  |||||| |||||  |||||||||||||||||||| ||    
T  20146098 catggaaggagtgctgatcgtgggattagtttctttccaagttatttcctatgtataaatagtagtttttcataggtaaaacgggtcgcaaatcacccat 20145999  T
Q  283 acaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgt 382  Q
     || |||||||||||| ||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20145998 gcataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgt 20145899  T
Q  383 attttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 469  Q
    ||| ||||||||||| ||||| |||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  20145898 attctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacct-ttttctgtcgaaagacgccaca 20145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 180 - 467
Target Start/End: Complemental strand, 2547198 - 2546914
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtat-ctttgtataaataagagttttccataga-aaaacgggtcgcaaatca 277  Q
    |||||||||||||||||||||| |||||||| ||||||||| | |||| | | || ||||||| ||| ||||||||||||  ||||||||||||||||||    
T  2547198 tctacatggaaggagtgttgatcgtgggattagtttctttcta-gttatttttctatgtataagtaatagttttccatagggaaaacgggtcgcaaatca 2547100  T
Q  278 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 377  Q
    |||||| | |||||||||||| |||||||||||   |||||||||| ||| |||||||||| |||||||||||||| |  || |||||||||||     |    
T  2547099 cctatatagaattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaaaggatttggcagaccacctttatttta----c 2547004  T
Q  378 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgcca 467  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  2547003 attgtattttacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaaccttttttccgtcgaaagacgcca 2546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 180 - 451
Target Start/End: Original strand, 14987006 - 14987278
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    ||||||||||||||||| |||| ||| |||  |||||||||||  ||| | ||||||||||||||||||||||||||||  |||| |||||||| |||||    
T  14987006 tctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaaaatgggtcgcatatcac 14987104  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||      
T  14987105 ctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgag 14987204  T
Q  379 ttgta-ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 451  Q
     |||| ||||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||    
T  14987205 atgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 14987278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 180 - 451
Target Start/End: Original strand, 15416617 - 15416889
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    ||||||||||||||||| |||| ||| |||  |||||||||||  ||| | ||||||||||||||||||||||||||||  |||| |||||||| |||||    
T  15416617 tctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaaaatgggtcgcatatcac 15416715  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||      
T  15416716 ctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaaccacctttatttttaatgag 15416815  T
Q  379 ttgta-ttttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 451  Q
     |||| ||||| |||| ||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||    
T  15416816 atgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 15416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 235 - 463
Target Start/End: Complemental strand, 17600766 - 17600539
Alignment:
Q  235 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  ||||||||||| | |||||| ||||||||||||||||||| |||||||||||| ||||||||||||  |||||| ||||||| |||||    
T  17600766 tgtataaatagtagttttccataaggaaaacgtgtcgcaaatcacctatacagaattctaaaacactcgaagtaccggcacgagaggaaagagtcataaa 17600667  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 433  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||  || ||||||||| |  | |||| |||||    
T  17600666 gaatgtatgtaaaggatttgtcgaacaacctttatttttaatgctttgtatgttatctttcctttaagtttatggaatttaaacct--ttcctttacttt 17600569  T
Q  434 gcttttaaaaccttttttctgtcgaaagac 463  Q
     ||||||||||||||||| |||||||||||    
T  17600568 tcttttaaaaccttttttttgtcgaaagac 17600539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 180 - 429
Target Start/End: Complemental strand, 24832657 - 24832402
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    ||||||||||||||||| ||||  || |||| ||||||||| |  ||| |  || ||||||||||| |||||| |||||  ||||||||||||||||| |    
T  24832657 tctacatggaaggagtggtgatcatgagattagtttctttctac-ttatttcctatgtataaataatagtttttcatagggaaaacgggtcgcaaatcgc 24832559  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    ||||||| |||| ||||||| |||||||| ||| || |||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||    
T  24832558 ctatacagaatt-taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccaccattatttttaatgca 24832460  T
Q  379 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 429  Q
           |||||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  24832459 cttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 24832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 235 - 469
Target Start/End: Complemental strand, 3743620 - 3743380
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcgaagtaccggagcgagagaaaagagtgataa 332  Q
    ||||||||||  ||||||||| ||| |||||||||||||||||||||||||| |||||||||| || |||||||||||| ||   |||||||||| ||||    
T  3743620 tgtataaatagtagttttccaaagagaaaacgggtcgcaaatcacctatacataattctaaaaacactcgaagtaccggtgctgaagaaaagagtcataa 3743521  T
Q  333 agaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt-aaactt-aatgccttaac 430  Q
    | |||||||  |||||||||||||||| ||||||||||||||||| ||||| ||||  ||||||| ||| | ||||||||| |||||| |||||||| ||    
T  3743520 aaaatgtatacaaaggatttgtcgaaccacctttatttttaatgccttgtactttatttttccttcaagattctgcaatttcaaacttgaatgcctttac 3743421  T
Q  431 tttgctttt--aaaaccttttttctgtcgaaagacgccaca 469  Q
    ||| || ||  |||||| ||||| ||||||||||| |||||    
T  3743420 tttactgttaaaaaaccctttttttgtcgaaagacaccaca 3743380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 235 - 422
Target Start/End: Original strand, 4173426 - 4173615
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  || |||||||||  ||||||||||||||||| |||||| | |||||||||||| |||||||| ||  ||||||||||||||| |||||    
T  4173426 tgtataaatattagatttccatagggaaaacgggtcgcaaatcgcctatagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaa 4173525  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgca-ttgtattttacctttcctttaagttcctgcaatttaaacttaat 422  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||| ||| ||||    ||| ||||||||| ||||||||||||||||||    
T  4173526 gaatgtatgtaaaggatttgtcgaactagttttatctttaatgcacttgcatttgtatttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 10649207 - 10649318
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  |||| |||||||  |||| | |||||||||||| |||| ||| ||| |||||| ||||||||||||  |||||||||||||| |||||    
T  10649207 tgtataaatagtagttgtccatagggaaaatgagtcgcaaatcacttatagaaatttc-aaaacactcgaagtaccggcacgagagaaaagagttataaa 10649305  T
Q  334 gaatgtatgtaaa 346  Q
    |||||||||||||    
T  10649306 gaatgtatgtaaa 10649318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 5531725 - 5531784
Alignment:
Q  286 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 345  Q
    ||||| || |||| |||||||||||| ||||||||||||||| ||| | |||||||||||    
T  5531725 aaattatacaacactcgaagtaccggtgcgagagaaaagagttatacaaaatgtatgtaa 5531784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 403
Target Start/End: Complemental strand, 18046501 - 18046386
Alignment:
Q  286 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtat 384  Q
    ||||||||||||| | |||||||||| |||||| |||||    ||| | ||||| ||||| | |||||||||||| ||||||| |||||||||| || |     
T  18046501 aaattctaaaacaattgaagtaccggcgcgagaaaaaaggc--atacataatgtgtgtaatatgatttgtcgaaccaccttta-ttttaatgcaatgcaa 18046405  T
Q  385 tttacctttcctttaagtt 403  Q
    ||||||||| |||||||||    
T  18046404 tttaccttttctttaagtt 18046386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 14961215 - 14961170
Alignment:
Q  358 actacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    ||||||||||||||||||||| || ||||||||||| |||| ||||    
T  14961215 actacctttatttttaatgcaatgcattttaccttttctttgagtt 14961170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 15390687 - 15390642
Alignment:
Q  358 actacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    ||||||||||||||||||||| || ||||||||||| |||| ||||    
T  15390687 actacctttatttttaatgcaatgcattttaccttttctttgagtt 15390642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 180 - 469
Target Start/End: Complemental strand, 28371324 - 28371034
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccataga-aaaacgggtcgcaaatca 277  Q
    ||||||||||||||||| |||| ||| |||| |||||||||||||||| | |||| ||||||||||  ||||||||||||  |||| |||||||||||||    
T  28371324 tctacatggaaggagtgctgatcgtgagattagtttctttccaagttatt-tcttatgtataaatagtagttttccatagggaaaatgggtcgcaaatca 28371226  T
Q  278 cctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 377  Q
    |||||| |||||||||||||| |||||||||| | | ||| ||||| ||| ||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  28371225 cctatataaaattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaaagtatttgtcgaacctcctttatttttaatgc 28371126  T
Q  378 attgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 469  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  28371125 attgtattttactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaaccatttttctgtcgaaagacgccaca 28371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 180 - 464
Target Start/End: Complemental strand, 9218367 - 9218079
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattc-gtttctttccaagttagtatctt-tgtataaataagagttttccataga-aaaacgggtcgcaaatc 276  Q
    ||||||||||||||||||||||  |||||||  | || ||| || |||||| | || ||||||||||   |||||||||||  |||||||||||||||||    
T  9218367 tctacatggaaggagtgttgatcatgggattgtgcttttttgca-gttagtttattatgtataaatagttgttttccatagggaaaacgggtcgcaaatc 9218269  T
Q  277 acctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatg 376  Q
    || |||||| |||||||||||| |||||||||||  ||||||||||||  | ||| |||||||||||||| |||||||||||| | ||||||||||||||    
T  9218268 acatatacagaattctaaaacactcgaagtaccgacgcgagagaaaag--tcatacagaatgtatgtaaatgatttgtcgaaccatctttatttttaatg 9218171  T
Q  377 cattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaacc----ttttttctgtcgaaagacg 464  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||  || ||||||||||||||| |    |||||||||||||||||||    
T  9218170 cattgtattttatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaaaacctttttttttctgtcgaaagacg 9218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 236 - 419
Target Start/End: Original strand, 9286315 - 9286498
Alignment:
Q  236 gtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaag 334  Q
    |||||||||  ||||||||||||  ||||||||||||||||||| |||| ||| ||||| |||| |||||||||||| ||||||||||| ||| ||| |     
T  9286315 gtataaatagtagttttccatagggaaaacgggtcgcaaatcacatatagaaa-ttctacaacactcgaagtaccggtgcgagagaaaatagttatacaa 9286413  T
Q  335 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||  |||||||| ||||| ||| |||||    
T  9286414 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcaatgcaatttatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 340 - 466
Target Start/End: Complemental strand, 10661095 - 10660970
Alignment:
Q  340 atgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgctttt 439  Q
    |||||||||||||||||||| ||||||||||| |||||||||  ||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  440 aaaaccttttttctgtcgaaagacgcc 466  Q
    ||||||  ||||||||| |||||||||    
T  10660995 aaaacc-cttttctgtccaaagacgcc 10660970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 235 - 378
Target Start/End: Original strand, 23540207 - 23540351
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  ||||||||||||  ||||||||| |||||||||||||||| |||||||||| | || |||||||||  | |||||||||| | |||||    
T  23540207 tgtataaatagtagttttccatagggaaaacgggttgcaaatcacctatacagaattctaaaatactcaaagtaccggctcaagagaaaagaatcataaa 23540306  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||    
T  23540307 gaatgtatgtaaaagatttttcgaaccacctttatttttaatgca 23540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 381
Target Start/End: Complemental strand, 16600737 - 16600591
Alignment:
Q  235 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  |||||||||||| |||||||||| ||||||||| |||| ||| ||||| |||| |||||||||||| ||||||||| ||||| ||| |    
T  16600737 tgtataaatagtagttttccataggaaaaacgggttgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgcgagagaatagagttataca 16600639  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattg 381  Q
     |||||| |||||||||||||||||| || ||||||||||||||||||    
T  16600638 taatgtacgtaaaggatttgtcgaaccacatttatttttaatgcattg 16600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 10661911 - 10661748
Alignment:
Q  185 atggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttcca-tagaaaaacgggtcgcaaatcacctata 283  Q
    ||||||||||||||||| |||||||| |||||||||| ||||  | ||| ||||||||||||||||||||| | | ||||| ||||||||||||||||||    
T  10661911 atggaaggagtgttgatcgtgggattagtttctttcc-agttgttttctatgtataaataagagttttccattgggaaaacaggtcgcaaatcacctata 10661813  T
Q  284 caaaattct-aaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 347  Q
    || |||||| |||||  || | ||||||| |||| | |||||||| |||||||||||||||||||    
T  10661812 cagaattctaaaaactctcaatgtaccggtgcgataaaaaagagtcataaagaatgtatgtaaag 10661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 13110345 - 13110204
Alignment:
Q  266 ggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctt 365  Q
    ||||||||||||| |||| ||| ||||| |||| |||||||||||| | ||||||||||||| ||| | ||| |||||| | ||||||| |||| |||||    
T  13110345 ggtcgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctt 13110247  T
Q  366 tatttttaatgcattgtattttacctttcctttaagttcctgc 408  Q
    ||||||||||||| || | |||| |||| ||||||||| ||||    
T  13110246 tatttttaatgcaatgcaatttatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 24577332 - 24577408
Alignment:
Q  235 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccgg 311  Q
    ||||||||||  |||||| ||||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  24577332 tgtataaatagtagtttttcataggaaaacgggtggcaaatcacctatacagaattctaaaacaatcgaagtaccgg 24577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 408
Target Start/End: Original strand, 18672125 - 18672261
Alignment:
Q  268 tcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactaccttta 367  Q
    ||||||||||| |||| ||| ||||| |||| ||||||||| || | ||||||||||||| ||| | |||||||||||| ||||||| ||   |||||||    
T  18672125 tcgcaaatcacttatagaaa-ttctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttga---accttta 18672220  T
Q  368 tttttaatgcattgtattttacctttcctttaagttcctgc 408  Q
    ||||||||||| |||| |||| |||| ||| ||||| ||||    
T  18672221 tttttaatgcaatgtaatttatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 403
Target Start/End: Complemental strand, 25095223 - 25095053
Alignment:
Q  235 tgtataaataagagttttccatag--aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataa 332  Q
    ||||||||||  |||||||||||   |||||| |  |||||||||| |||| ||| ||||||||||  ||||||||||| |||||| |||||||| |||     
T  25095223 tgtataaatagtagttttccatattaaaaaacagaccgcaaatcacttatagaaa-ttctaaaacacccgaagtaccggcgcgagataaaagagttatac 25095125  T
Q  333 agaatgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    |  |||||||| |||  ||||||||||| ||||||||| | |||||| || | |||| |||| |||||||||    
T  25095124 atgatgtatgtaaaattatttgtcgaaccacctttattataaatgcaatgcaatttatcttttctttaagtt 25095053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 378
Target Start/End: Original strand, 26136195 - 26136242
Alignment:
Q  331 aaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||    
T  26136195 aaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 22713661 - 22713751
Alignment:
Q  313 gcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    |||| |||||||| | ||| ||||| ||||||||| ||||||| ||| |||||||||||||||||| ||||  ||| |||| |||||||||    
T  22713661 gcgatagaaaagatttatatagaatatatgtaaagaatttgtcaaaccacctttatttttaatgcaatgtaaattatcttttctttaagtt 22713751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 403
Target Start/End: Original strand, 27123570 - 27123736
Alignment:
Q  235 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  |||||||||||| ||||| | |||||||||||  |||| ||| ||||| |||| ||  |||||||  ||||||||||||||| ||| |    
T  27123570 tgtataaatagtagttttccataggaaaaatgagtcgcaaatcaattatagaaa-ttctacaacactc--agtaccgatgcgagagaaaagagttataca 27123666  T
Q  334 gaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
     |||||||||||   ||||| |||||| ||||||| |||||||||| || | |||| | ||||||||||||    
T  27123667 taatgtatgtaatctgatttatcgaaccaccttta-ttttaatgcaatgcaatttatcattcctttaagtt 27123736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 9006973 - 9006931
Alignment:
Q  361 acctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    |||||||||||||||||| |  |||||||||||||||||||||    
T  9006973 acctttatttttaatgcaatacattttacctttcctttaagtt 9006931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 24680835 - 24680890
Alignment:
Q  348 gatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttc 404  Q
    |||||||||||| || |||| |||||||||| |||| ||||||||| ||||||||||    
T  24680835 gatttgtcgaaccacattta-ttttaatgcaatgtaatttaccttttctttaagttc 24680890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 7e-81; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 180 - 443
Target Start/End: Original strand, 19217915 - 19218177
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    |||||||| |||||||| || | |||||||| ||||||||||| |||| | | | |||||||||||  |||||||||||  |||||||||||||||||||    
T  19217915 tctacatgaaaggagtgctggtcgtgggattagtttctttcca-gttattttttatgtataaataactgttttccatagggaaaacgggtcgcaaatcac 19218013  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    ||||||||| |||||||||| || ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19218014 ctatacaaa-ttctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 19218112  T
Q  379 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaa 443  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  19218113 ttgtattttacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaaa 19218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 180 - 429
Target Start/End: Original strand, 20064397 - 20064653
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||  ||| |  || ||||||||||| ||||||||||||  ||||||||||||||||| |    
T  20064397 tctacatggaaggtgtgctgattgtgggattagtttctttccac-ttatttactatgtataaataatagttttccatagggaaaacgggtcgcaaatcgc 20064495  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    ||||||| |||||||||||| |  ||||||||| || |||||||||||| ||||| |||||||||||| ||||||| |||| ||||||||||||||||||    
T  20064496 ctatacagaattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgtatgtaaatgatttgttgaaccacctttatttttaatgca 20064595  T
Q  379 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 429  Q
           || ||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  20064596 cttgcatttatattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 182 - 429
Target Start/End: Complemental strand, 20061056 - 20060802
Alignment:
Q  182 tacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaa-acgggtcgcaaatcacct 280  Q
    |||||| || ||||| |||| |||||||| ||||||||| || ||| |  || ||||||||| | ||||||||||||   | |||||| ||||||| |||    
T  20061056 tacatgtaatgagtgatgatcgtgggattagtttctttc-aacttacttcctatgtataaatgatagttttccatagggtagacgggttgcaaatcgcct 20060958  T
Q  281 atacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca-- 378  Q
    ||||| |||||||||||||| ||| |||||| || |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||      
T  20060957 atacagaattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcact 20060858  T
Q  379 -----ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 429  Q
         |||||||||  |||| ||||||||| |||||||||||||||||||| ||||    
T  20060857 tgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 180 - 378
Target Start/End: Complemental strand, 20713426 - 20713228
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    ||||||||||||||||| |||| |||||||| ||||||||| || ||| |  || ||||||||||| ||||||||||||  ||||||||||||||||| |    
T  20713426 tctacatggaaggagtgctgatcgtgggattagtttctttc-aacttatttcctatgtataaataatagttttccatagggaaaacgggtcgcaaatcgc 20713328  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
     |||||| |||||||||||| ||||| |||||  || |||||||||||| |||||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  20713327 atatacagaattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgtatgtaacagatttgttgaacaacctttatttttaatgca 20713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 180 - 378
Target Start/End: Original strand, 23210042 - 23210240
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    |||| ||||||||||||||||| |||||||| |||||||||||  ||| |  || ||||||||||| ||||| ||||||  ||||| |||||||||||      
T  23210042 tctaaatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaataatagtttcccatagggaaaacaggtcgcaaatcgt 23210140  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
     |||||| |||||||||||| |||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||| || |||||||||||||||    
T  23210141 atatacataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaaccacttttatttttaatgca 23210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 184 - 429
Target Start/End: Original strand, 20058571 - 20058824
Alignment:
Q  184 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctat 282  Q
    ||||||||||||| |||| |||||||| |||| ||| | | ||| |  || ||||||||| | ||||||||||| |  | || ||| ||||||| |||||    
T  20058571 catggaaggagtgctgatcgtgggattagttttttttccacttacttcctatgtataaatgatagttttccataaggtagacaggttgcaaatcgcctat 20058670  T
Q  283 acaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca---- 378  Q
     |||||||||||||||||| ||||||  | || |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||        
T  20058671 gcaaaattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccacctttatttttaatgcaattg 20058770  T
Q  379 ---ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaa 429  Q
       |||||||||   |||  |||||||| |||||||||||||||||||| ||||    
T  20058771 catttgtattttttattttatttaagtttctgcaatttaaacttaatgcattaa 20058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 187 - 347
Target Start/End: Original strand, 23379314 - 23379474
Alignment:
Q  187 ggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctataca 285  Q
    ||||||||||||||| |||||||| |||||||| |   ||| | ||| ||||||||||  ||||||||||||  ||||||||||||||||||||||| ||    
T  23379314 ggaaggagtgttgatcgtgggattagtttctttactc-ttattttctatgtataaatagtagttttccatagggaaaacgggtcgcaaatcacctatgca 23379412  T
Q  286 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 347  Q
     |||||||||||| |||||||||  | ||||||||||||||| |||||||||||||||||||    
T  23379413 gaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaaag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 180 - 359
Target Start/End: Complemental strand, 25951513 - 25951334
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    |||||||||||||||||||||| ||| |||| |||||||| | | ||| |  |  ||||||||||| ||||||||||||  ||||| ||||| ||||| |    
T  25951513 tctacatggaaggagtgttgatcgtgagattagtttcttttccacttatttccgatgtataaataatagttttccataggtaaaacaggtcgtaaatcgc 25951414  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaac 359  Q
     |||||| |||||||||||| || |||||||| |  ||||||||||||| |||||||||||||||||| ||||||||||||    
T  25951413 ttatacataattctaaaacactcaaagtaccg-acagagagaaaagagtcataaagaatgtatgtaaaagatttgtcgaac 25951334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 403
Target Start/End: Original strand, 17167249 - 17167417
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  |||||||||| |  |||||||||| |||||||| |||| ||| ||||| ||||   |||||||| | ||||||||||||||| ||| |    
T  17167249 tgtataaatagtagttttccatggggaaaacgggtcccaaatcacttatagaaa-ttctacaacaccagaagtaccagcgcgagagaaaagagtaataca 17167347  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
     ||||||||||||||||||||||||| |||||||||||||||| | || | |||| |||| |||||||||    
T  17167348 aaatgtatgtaaaggatttgtcgaaccacctttatttttaatgtaatgcaatttatcttttctttaagtt 17167417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 403
Target Start/End: Original strand, 19923956 - 19924112
Alignment:
Q  247 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 345  Q
    ||||||||||||  |||| |||||||||| ||| |||| ||| |||||  ||| | ||| ||| || ||||||||||||||| ||| ||||||||| |||    
T  19923956 agttttccatagggaaaatgggtcgcaaaccacttatagaaa-ttctaccacacttgaattactggcgcgagagaaaagagttatacagaatgtatataa 19924054  T
Q  346 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    | |||||||||||| |||||||||||||||||| |||| |||| |||| |||||||||    
T  19924055 aagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtt 19924112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 286 - 419
Target Start/End: Complemental strand, 24878489 - 24878356
Alignment:
Q  286 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 385  Q
    |||||||| |||| ||||| |||||  ||||||||||||||| |||   ||| ||||||||||||||||| ||| |||||||||||||||||| || | |    
T  24878489 aaattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaat 24878390  T
Q  386 ttacctttcctttaagttcctgcaatttaaactt 419  Q
    ||| |||| ||||||||| ||||  |||||||||    
T  24878389 ttatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 247 - 403
Target Start/End: Original strand, 19926683 - 19926839
Alignment:
Q  247 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 345  Q
    ||||||||||||  |||| |||||||||| ||| |||| ||| |||||  ||| | ||| ||| || ||||||||||| ||| ||| ||||||||  |||    
T  19926683 agttttccatagggaaaatgggtcgcaaaccacttatagaaa-ttctaccacacttgaattactggcgcgagagaaaatagttatacagaatgtaaataa 19926781  T
Q  346 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    | |||||||||||| |||||||||||||||||| || | |||| |||| |||||||||    
T  19926782 aagatttgtcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtt 19926839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 403
Target Start/End: Complemental strand, 17987619 - 17987482
Alignment:
Q  265 gggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggag-cgagagaaaagagtgataaagaatgtatgtaaag-gatttgtcgaactac 362  Q
    |||||||||||||  |||||| |||||||||||| || || |||||  | | || |||| |||| ||| |||||||||||| |  ||||||| || | ||    
T  17987619 gggtcgcaaatca--tatacagaattctaaaacactcaaactaccgacgtctagggaaacgagttatacagaatgtatgtagactgatttgtagacc-ac 17987523  T
Q  363 ctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    |||||||||||||||| || |||||||||||||||| ||||    
T  17987522 ctttatttttaatgcaatgcattttacctttcctttgagtt 17987482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 21165342 - 21165282
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaa 294  Q
    ||||||||||| ||||||||||||  ||||||||||||||||| |||||| | ||||||||    
T  21165342 tgtataaataatagttttccatagggaaaacgggtcgcaaatcgcctatatagaattctaa 21165282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 467
Target Start/End: Complemental strand, 24878319 - 24878288
Alignment:
Q  436 ttttaaaaccttttttctgtcgaaagacgcca 467  Q
    ||||||||||||||||||||||||||||||||    
T  24878319 ttttaaaaccttttttctgtcgaaagacgcca 24878288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 25951292 - 25951260
Alignment:
Q  391 tttcctttaagttcctgcaatttaaacttaatg 423  Q
    ||||||||||||| |||||||||||||||||||    
T  25951292 tttcctttaagtttctgcaatttaaacttaatg 25951260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 184 - 462
Target Start/End: Original strand, 24698999 - 24699275
Alignment:
Q  184 catggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctat 282  Q
    ||||||||||||||||   ||| |||| |||||||| |  |||| | ||| ||||||||||| ||||||||||||  ||||||||||||||||| |||||    
T  24698999 catggaaggagtgttggacgtgtgattagtttcttttcc-gttattttctatgtataaataatagttttccatagggaaaacgggtcgcaaatcccctat 24699097  T
Q  283 acaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgt 382  Q
    ||| |||||||||||| |||||||||||| ||||||||||||| | |  |||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24699098 acagaattctaaaacactcgaagtaccggcgcgagagaaaagaatca--aagaatgtatttaaaggatttgtcgaaccacctttatttttaatgcattgt 24699195  T
Q  383 attttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaaga 462  Q
    |||||||||||||||||||||  |||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||    
T  24699196 attttacctttcctttaagtttatgcaatttaaacttaatgcctttactttgcttatgaaaccctttttctgtcgaaaga 24699275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 181 - 469
Target Start/End: Complemental strand, 15687148 - 15686859
Alignment:
Q  181 ctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaa-aaacgggtcgcaaatcacc 279  Q
    |||||| ||||||||| |||| |||||||| ||||||||||| |||| | ||| ||||||||||||||||||||||||   ||||| |||||||||||||    
T  15687148 ctacatagaaggagtgatgatcgtgggattagtttctttcca-gttattttctatgtataaataagagttttccatagtggaaacgagtcgcaaatcacc 15687050  T
Q  280 tatacaaaattctaaaac-attcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    |||||  ||||||||||  | |||||||||||  |||||||||||||||  ||||||||||||| || |||||| | | || ||||||||||||||||||    
T  15687049 tatactgaattctaaaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatgtatgaaatggatttttaggaccacctttatttttaatgca 15686950  T
Q  379 ttgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 469  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||    
T  15686949 ttgtattttacctttgctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaaccctttttctatcgaaacacgccaca 15686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 235 - 463
Target Start/End: Complemental strand, 26011067 - 26010836
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  ||||||||||||  ||||| |||||||||||||||||||  |||||||||||| |||||||||||| ||||||||| ||||| |||||    
T  26011067 tgtataaatagtagttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggcgcgagagaatagagtcataaa 26010968  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa---tttaaacttaatgccttaac 430  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||    |||||||||||||||| ||    
T  26010967 gaatgtatgtaaatgatttgtcgaaccacctttatttttaaagcattgtattttatctttcctttaagtttctgcaagttattaaacttaatgcctttac 26010868  T
Q  431 tttgcttttaaaaccttttttctgtcgaaagac 463  Q
    ||||||||||||| |  ||||||||||||||||    
T  26010867 tttgcttttaaaaac-cttttctgtcgaaagac 26010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 235 - 450
Target Start/End: Original strand, 13428700 - 13428914
Alignment:
Q  235 tgtataaataagagttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  ||||||||||||   ||||  ||||||||||||||||| ||  |||||||||| |||||||||||  | ||||||||||||| |||||    
T  13428700 tgtataaatagtagttttccataggggaaacatgtcgcaaatcacctatataa--ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaa 13428797  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 433  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||||||||| ||||||||||| || |||||||||||||||||||| || |||||    
T  13428798 gaatgtatgtaaaggatttgttgaaccacatttattattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttacttt 13428897  T
Q  434 gcttttaaaaccttttt 450  Q
    |||||||||||| ||||    
T  13428898 gcttttaaaaccctttt 13428914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 235 - 442
Target Start/End: Complemental strand, 4769949 - 4769742
Alignment:
Q  235 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaag 334  Q
    ||||||||||  ||||||||||||  ||| | ||| ||||||| ||||||| |||||||||||| ||||| |||| | || |||||||||||| ||||||    
T  4769949 tgtataaatagtagttttccatagggaaaagcgtcccaaatcatctatacataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaag 4769850  T
Q  335 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttg 434  Q
    ||||||||||| | |||| |||||| |||||||||| |||||||||||||||   ||||||||||||||  || ||||||||||||||||||| ||||||    
T  4769849 aatgtatgtaacgaatttttcgaaccacctttatttctaatgcattgtatttattctttcctttaagtttatgaaatttaaacttaatgcctttactttg 4769750  T
Q  435 cttttaaa 442  Q
    ||||||||    
T  4769749 cttttaaa 4769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 235 - 467
Target Start/End: Original strand, 4765677 - 4765916
Alignment:
Q  235 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  |||||||||||| ||||| ||||||||||||||||||| |  ||||||||||| | || ||||  | ||||||||||||||| |||||    
T  4765677 tgtataaatagtagttttccataggaaaaatgggtcgcaaatcacctatatagtattctaaaacacttgatgtactagcgcgagagaaaagagtcataaa 4765776  T
Q  334 gaat----gtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgcctta 428  Q
    ||||    ||||||||| |||||||||||| ||||||| ||||||||||||||| ||||  |||||||||||||  ||||| |||||||||||||||||     
T  4765777 gaattaatgtatgtaaatgatttgtcgaaccacctttacttttaatgcattgtactttatttttcctttaagtttatgcaattttaaacttaatgccttt 4765876  T
Q  429 actttgctttt-aaaaccttttttctgtcgaaagacgcca 467  Q
    ||||||||||| |||||| ||||  |||||||||||||||    
T  4765877 actttgcttttaaaaacccttttcatgtcgaaagacgcca 4765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 180 - 378
Target Start/End: Complemental strand, 7148988 - 7148790
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaaac-gggtcgcaaatcac 278  Q
    |||||||||||||||||||||| |||||||| |||||||||||| ||| |  || ||||||||||  |||||||||||| ||||| ||||| |||||  |    
T  7148988 tctacatggaaggagtgttgatcgtgggattagtttctttccaa-ttatttcctatgtataaatagtagttttccataggaaaaccgggtcacaaattgc 7148890  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    ||||||| |||||||||| | | |||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||||    
T  7148889 ctatacagaattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacttttacttttaatgca 7148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 235 - 469
Target Start/End: Original strand, 4832504 - 4832740
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  ||||||||||||  |||| || |||||||||||||||||| |||||||||||| |||||| |  || | ||||||||||||| | |||    
T  4832504 tgtataaatagtagttttccatagggaaaatggatcgcaaatcacctatacagaattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaa 4832603  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaacttt 433  Q
    |||| ||| |||||||| ||  | || |||||||| |||||||||||||||||||  |||||||| ||||  |||||||||||||||||| ||| || ||    
T  4832604 gaatatatttaaaggatctgctggaccacctttatatttaatgcattgtattttaattttcctttgagtttatgcaatttaaacttaatgtctttacctt 4832703  T
Q  434 gcttttaaaa-ccttttttctgtcgaaagacgccaca 469  Q
    ||||| |||| |||||||||| |||||||||| ||||    
T  4832704 gctttaaaaacccttttttctttcgaaagacgtcaca 4832740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 180 - 386
Target Start/End: Original strand, 9033415 - 9033622
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctt-tgtataaataagagttttccatagaaaaacgggtcgcaaatcac 278  Q
    |||||||||| ||||||||||| ||| |||| |||||||||||  ||| | |||| ||||||||||| |||||||||||| ||||||||||||| ||| |    
T  9033415 tctacatggagggagtgttgatcgtgtgattagtttctttccac-ttatt-tcttatgtataaataatagttttccataggaaaacgggtcgcatatcgc 9033512  T
Q  279 ctatacaaaattct-aaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgc 377  Q
    ||||||| |||| | |||||| |||||||| ||| || ||||||||  || | ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9033513 ctatacagaattttcaaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgtatgtaaaggatttgtcaaaccacctttatttttaatgc 9033612  T
Q  378 a-ttgtattt 386  Q
    | ||||||||    
T  9033613 acttgtattt 9033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 180 - 375
Target Start/End: Original strand, 29614529 - 29614724
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||  ||| |  || |||||||| || ||||||||||||  |||| |||||||||||| |    
T  29614529 tctacatggaaggagtgctgattgtgggattagtttcttttcat-ttatttcctatgtataaa-aatagttttccatagggaaaatgggtcgcaaatcgc 29614626  T
Q  279 ctatacaaaattctaa-aacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaat 375  Q
    ||||| | |||||||| |||| |||||||||||   | |||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  29614627 ctatatataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgtaaaggatttgtcgaaccacctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 235 - 413
Target Start/End: Complemental strand, 23378668 - 23378488
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  |||||| |||||  |||| | ||| |||||||| ||||||||||||||||| | |||||||| ||| ||||||||||||||| ||| |    
T  23378668 tgtataaatagtagttttacatagggaaaatgtgtcacaaatcacttatacaaaattctaaaatactcgaagtatcggcgcgagagaaaagagtcataca 23378569  T
Q  334 gaatgtatgtaaaggatttg-tcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 413  Q
     ||||||||||||||||||| | |||| |||||||||||||||||| || | |||| |||||||||||||| || ||||||    
T  23378568 taatgtatgtaaaggatttgtttgaaccacctttatttttaatgcaatgcaatttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 238 - 378
Target Start/End: Original strand, 16242928 - 16243069
Alignment:
Q  238 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 336  Q
    |||||||  ||||||||||||  |||||| |||| ||||  ||| ||||  ||||||||||| ||||||||||   ||||||||||||||| ||||||||    
T  16242928 ataaatagtagttttccatagggaaaacgagtcgtaaatttcctctacaggattctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaa 16243027  T
Q  337 tgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    ||||||||||| ||||||||||| || |||||||||||||||    
T  16243028 tgtatgtaaagcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 409
Target Start/End: Original strand, 27304424 - 27304547
Alignment:
Q  286 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 385  Q
    |||||||| |||| || ||||| |||  |||||||||||| | ||| | |||||||||| || ||||||| ||| || ||||||||||||||| || | |    
T  27304424 aaattctacaacactcaaagtatcggctcgagagaaaagaattatacaaaatgtatgtatagaatttgtcaaaccacttttatttttaatgcaatgcaat 27304523  T
Q  386 ttacctttcctttaagttcctgca 409  Q
    |||  ||| ||||||||| |||||    
T  27304524 ttatattttctttaagtttctgca 27304547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 13409876 - 13409834
Alignment:
Q  361 acctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  13409876 acctttatttttaatgcaatgcattttacctttcctttaagtt 13409834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 409
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  335 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgca 409  Q
    |||| ||||||||||||||| |||| ||||||||||| |||||| || | |||| |||| |||||| || |||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 409
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  335 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgca 409  Q
    |||| ||||||||||||||| |||| ||||||||||| |||||| || | |||| |||| |||||| || |||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 7e-78; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 238 - 469
Target Start/End: Original strand, 22397545 - 22397777
Alignment:
Q  238 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcgaagtaccggagcgagagaaaagagtgataaaga 335  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||||| ||| |||||||    
T  22397545 ataaataagagttttccgtagggaaaacgggtcgcaaatcacctatacagaattctaaaaacactcgaagtaccggcgcgagagaaaatagtcataaaga 22397644  T
Q  336 atgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcc-tttaagttcctgcaatttaaacttaatgccttaactttg 434  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    |||||     
T  22397645 atgtatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctttccttttaagtttctgcaatttaaacttaatgc--agactttt 22397742  T
Q  435 cttttaaaaccttttttctgtcgaaagacgccaca 469  Q
    ||||||||||||||||| |||||||||||||||||    
T  22397743 cttttaaaaccttttttttgtcgaaagacgccaca 22397777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 180 - 378
Target Start/End: Complemental strand, 16177502 - 16177304
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 278  Q
    ||||||||||||||||| ||||||||||||| |||||||||||  ||| | ||| ||||||||||  ||||||||||| | |||||||||||||||| ||    
T  16177502 tctacatggaaggagtgctgattgtgggattagtttctttccac-ttattttctatgtataaatattagttttccatatggaaaacgggtcgcaaataac 16177404  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    |||||||||||||||||||| ||||||||||      |||||||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||    
T  16177403 ctatacaaaattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaaaggatttttcgaaccacatttatttttaatgca 16177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 260 - 460
Target Start/End: Complemental strand, 17524998 - 17524797
Alignment:
Q  260 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaac 359  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||||| | || | ||||||||||||| ||||||||||||| ||||||| |||||| ||    
T  17524998 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggac 17524900  T
Q  360 tacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctgtcg 457  Q
     |||||||||||||||||||| || ||||  ||| ||||||||| || ||| |||||| ||||| |||| |||||| |||| |||||||||||| | |||    
T  17524899 aacctttatttttaatgcattataatttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaaaaccttttttttatcg 17524800  T
Q  458 aaa 460  Q
    |||    
T  17524799 aaa 17524797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 182 - 378
Target Start/End: Original strand, 1177150 - 1177349
Alignment:
Q  182 tacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaaaacgggtcgcaaatcaccta 281  Q
    |||||||| |||||||||||  || |||| |||||||| ||  ||| |  || ||||||||||  |||||| ||||| ||||| || ||||||||| |||    
T  1177150 tacatggagggagtgttgatcatgagattagtttcttttcat-ttatttcctatgtataaatagtagttttgcataggaaaacaggacgcaaatcatcta 1177248  T
Q  282 tacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaaga----atgtatgtaaaggatttgtcgaactacctttatttttaatgc 377  Q
    |||| |||||||||||| |||||||||  | ||||||||||||||| |||||||    |||||||||||||||||||||||| |||||||||||||||||    
T  1177249 tacagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatacatgtatgtaaaggatttgtcgaaccacctttatttttaatgc 1177348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 180 - 374
Target Start/End: Complemental strand, 15830220 - 15830026
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 278  Q
    ||||||||||| ||||| | ||| ||||||| |||||||||||  ||| | ||| ||||||||||| |||||| |||| | ||||||||||||||||| |    
T  15830220 tctacatggaaagagtgctaattatgggattagtttctttccac-ttattttctatgtataaataatagttttgcataaggaaaacgggtcgcaaatcgc 15830122  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaa 374  Q
    ||||||| |||||||||||| || ||||| | | | ||||||||||||| ||||| |||||||||||| |||||||||||  || |||||||||||    
T  15830121 ctatacagaattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaatcacttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 238 - 403
Target Start/End: Original strand, 17947842 - 17948007
Alignment:
Q  238 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 336  Q
    |||||||  ||||||||||||  |||| |||||  ||||||| |||| ||| ||||| ||||||||||||| ||| || |||| ||||||| ||| | ||    
T  17947842 ataaatattagttttccatagggaaaatgggtcaaaaatcacttatagaaa-ttctacaacattcgaagtaacggcgcaagaggaaagagttatataaaa 17947940  T
Q  337 tgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    ||||||||||||||||||||||| ||||||||||||||| || || | |||| ||||||||||||||    
T  17947941 tgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaatttatctttcctttaagtt 17948007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 419
Target Start/End: Original strand, 14762938 - 14763090
Alignment:
Q  266 ggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctt 365  Q
    ||||||||||||| |||| ||| ||||| | || ||||||||| |   |||||||||||||| ||| ||||||||||||||||| || |||||| |||||    
T  14762938 ggtcgcaaatcacttatagaaa-ttctacatcactcgaagtactgacacgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctt 14763036  T
Q  366 tatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 419  Q
    ||||||||||||| || | |||| |||| ||||||||| ||||| ||| |||||    
T  14763037 tatttttaatgcaatgcaatttatcttttctttaagtttctgcacttttaactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 286 - 419
Target Start/End: Complemental strand, 18713842 - 18713709
Alignment:
Q  286 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtatt 385  Q
    |||||||| |||| || ||||||||   |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||| || | |    
T  18713842 aaattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaat 18713743  T
Q  386 ttacctttcctttaagttcctgcaatttaaactt 419  Q
    ||| | || ||||||||| ||||| ||| |||||    
T  18713742 ttatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 429
Target Start/End: Original strand, 31126082 - 31126351
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    ||||||||||||||||| | ||  ||||||| |||||||||||  ||| |  || ||||||||||| |||||||| |||  |||||||||| |||||| |    
T  31126082 tctacatggaaggagtgctaatcttgggattagtttctttccac-ttatttcctatgtataaataatagttttccttagggaaaacgggtctcaaatctc 31126180  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataa------------agaatgtatgtaaaggatttgtcgaactaccttt 366  Q
    |||||   |||||||||||| |||||||| |   || |||||||||||| ||||            | ||||||||||||||||||| ||||| ||||||    
T  31126181 ctatatggaattctaaaacactcgaagtaacaacgcaagagaaaagagtcataaatctcatattttaaaatgtatgtaaaggatttgccgaaccaccttt 31126280  T
Q  367 atttttaatgca-------ttgtattttacctttcctttaagttcctgcaattt-aaacttaatgccttaa 429  Q
    |||| |||||||       |||||||||  |||| |||| |||| ||||||||| ||||||||||| ||||    
T  31126281 atttataatgcacttgcatttgtattttttcttttctttgagtttctgcaatttaaaacttaatgcattaa 31126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 25945889 - 25945847
Alignment:
Q  361 acctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    |||||||||||||||||| || ||||||||| |||||||||||    
T  25945889 acctttatttttaatgcaatgcattttacctctcctttaagtt 25945847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 417
Target Start/End: Complemental strand, 28712461 - 28712360
Alignment:
Q  316 agagaaaagagtgataaagaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattta 414  Q
    |||||||||||| ||| | |||||||||||   |||||||||||| |||||||   |||||||| |||| ||||||||| ||||||||| ||||  ||||    
T  28712461 agagaaaagagtcatatataatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaatgtaatttaccttttctttaagtttctgcgtttta 28712363  T
Q  415 aac 417  Q
    |||    
T  28712362 aac 28712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 13002854 - 13002906
Alignment:
Q  316 agagaaaagagtgataaagaatgtatgtaaa-ggatttgtcgaactaccttta 367  Q
    |||||||||||| ||| ||||||||||||||  |||||||||||| |||||||    
T  13002854 agagaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccaccttta 13002906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 198 - 469
Target Start/End: Complemental strand, 11361866 - 11361595
Alignment:
Q  198 tgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa 296  Q
    |||| |||||||| ||||||||||| |  | | ||| |||||||||||||||||||| |||  ||||| ||||| | |||||||||||| ||||||||||    
T  11361866 tgatcgtgggattagtttctttccatgc-attttctatgtataaataagagttttccgtagggaaaacaggtcgtagatcacctatacagaattctaaaa 11361768  T
Q  297 cattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcct 396  Q
    || ||||  |||||  ||||| ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  11361767 cactcgacttaccgacgcgagggaaaagagttacaaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcat 11361668  T
Q  397 ttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 469  Q
    |||| || ||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||| |||||    
T  11361667 ttaaatttctgcaatttaaacttaatgcctttactttgcttttaaaacttttttcctgtcaaaagacaccaca 11361595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 180 - 462
Target Start/End: Original strand, 9409083 - 9409370
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattc---gtttctttccaagttagtatctt-tgtataaataagagttttccatagaa-aaacgggtcgcaaa 274  Q
    |||||||||||| ||||||||| ||||||||    |||| |||||| |||| | || | ||||||||||  ||||||||||||   ||||||||||||||    
T  9409083 tctacatggaagaagtgttgatcgtgggattatttgtttttttcca-gttattttcctatgtataaatagtagttttccataggggaaacgggtcgcaaa 9409181  T
Q  275 tcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaa 374  Q
    |||| |||| | |||||||||||| |||||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  9409182 tcacttatatagaattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 9409281  T
Q  375 tgcattgtattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgc-ttttaaaaccttttttctgtcgaaaga 462  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||| | || ||||||| ||||||||||  |||||||||| ||||    
T  9409282 tgcattgtattttatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttttaaaaccccttttctgtcgtaaga 9409370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 419
Target Start/End: Complemental strand, 16675269 - 16675086
Alignment:
Q  237 tataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaaga 335  Q
    ||||||||  ||||||||||| |||||||||||| |||||| | |||| | | |||||||||| |||||||||||| ||||||||| ||||| ||| |||    
T  16675269 tataaatagtagttttccatatgaaaaacgggtcacaaatcccttatagata-ttctaaaacactcgaagtaccggtgcgagagaagagagttatacaga 16675171  T
Q  336 atgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 419  Q
    |||||||| ||| |||||||||||| || |||||||| |||||| |  | ||||||||| ||||| ||| ||||| |||||||||    
T  16675170 atgtatgtaaaatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 5358102 - 5358040
Alignment:
Q  316 agagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    |||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  5358102 agagaaaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 8140930 - 8140832
Alignment:
Q  238 ataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 336  Q
    |||||||  ||||||||||| | ||||  |||| |||||||| |||| |||||||||||||| | |||||||||| ||||||| ||||||| ||| ||||    
T  8140930 ataaatagtagttttccatatggaaaattggtcacaaatcacttata-aaaattctaaaacacttgaagtaccggcgcgagagtaaagagttatatagaa 8140832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 403
Target Start/End: Complemental strand, 4697638 - 4697470
Alignment:
Q  235 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  ||||||||||| | |||| | |||||||||||| |||| ||| |||||||||| || ||| ||||| | ||||||| | ||| ||| |    
T  4697638 tgtataaatagtagttttccatatggaaaatgagtcgcaaatcacttatagaaa-ttctaaaacactcaaagcaccggcgtgagagaacaaagttataca 4697540  T
Q  334 gaatgtatgtaa-aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
     |||||||||||   |||| ||||||| |||||||  ||||||||| |  | ||||||||| |||||||||    
T  4697539 aaatgtatgtaatctgattcgtcgaaccaccttta-ctttaatgcaatacaatttaccttttctttaagtt 4697470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 403
Target Start/End: Original strand, 18558473 - 18558515
Alignment:
Q  361 acctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    |||||||||||||||||| || ||||||| |||||||||||||    
T  18558473 acctttatttttaatgcaatgcattttacatttcctttaagtt 18558515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 180 - 424
Target Start/End: Complemental strand, 20146420 - 20146169
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccata-gaaaaacgggtcgcaaatcac 278  Q
    ||||||| |||||||||||||| |||||| | |||||||||||||||| |  |||||||||||||||||||||||||| | |||| ||||||||||||||    
T  20146420 tctacatagaaggagtgttgatcgtgggactagtttctttccaagttatttgctttgtataaataagagttttccatatggaaaatgggtcgcaaatcac 20146321  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||||| |||||| ||||||||||||||||| | | || | ||||||||||||||||    
T  20146320 ctatacaaaattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgtatgtaaaggattttttggaccatctttatttttaatgca 20146222  T
Q  379 -------ttgtattttacctttcctttaagttcctgcaatttaaacttaatgc 424  Q
           || |||||| ||||| ||||||||| ||||||||||||||||||||    
T  20146221 cttgcatttttatttttccttttctttaagtttctgcaatttaaacttaatgc 20146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 235 - 443
Target Start/End: Original strand, 11013817 - 11014027
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    |||||| ||| |||||||||||||  |||| |||| ||||||||||||||||||||| ||||||| ||||| |||| |   ||||||||||||| |||||    
T  11013817 tgtatatataggagttttccataggtaaaatgggttgcaaatcacctatacaaaattttaaaacactcgaaataccagcttgagagaaaagagtcataaa 11013916  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaa-tttaaacttaatgccttaactt 432  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||  ||||||||||||| | | || ||||||||||||||||| ||||    
T  11013917 gaatatatgtaaaggatttgtcgagccacctttatttttaatgcattgtactttatttttcctttaagtttcaggaattttaaacttaatgcctttactt 11014016  T
Q  433 tgcttttaaaa 443  Q
    |||||||||||    
T  11014017 tgcttttaaaa 11014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 235 - 413
Target Start/End: Complemental strand, 33103201 - 33103021
Alignment:
Q  235 tgtataaataagagttttccataga--aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataa 332  Q
    ||||||||||  ||||||||||||   ||||| |||||||||||||||||||| |||||||||||| |||||||||||  | ||||||||||||| |||     
T  33103201 tgtataaatagtagttttccataggggaaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatat 33103102  T
Q  333 agaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaattt 413  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| || | |||| |||||||||||||| |||||||||    
T  33103101 agaatgtatgtaaaggatttgtcgaactacatttatttttaatgcaatgcaatttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 247 - 419
Target Start/End: Original strand, 36571655 - 36571826
Alignment:
Q  247 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 345  Q
    |||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| |||||||||  |  |||||||||||||| ||| | |||||||||||    
T  36571655 agttttccataggaaaaatgggtcgcaaatcacttatagaaa-ttctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaa 36571753  T
Q  346 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 419  Q
    |||||||||||||| |||||||||||||||||| || | || | |||| ||||||||| ||||| ||| |||||    
T  36571754 aggatttgtcgaaccacctttatttttaatgcaatgcaattaatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 249 - 419
Target Start/End: Original strand, 22607834 - 22608003
Alignment:
Q  249 ttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 347  Q
    |||||||||||  |||||||||||||||||| |||  ||  ||||| |||| |||||||||||  || |||||||||||| ||||| |||||||||||||    
T  22607834 ttttccatagaggaaacgggtcgcaaatcacttatggaat-ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaag 22607932  T
Q  348 gatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 419  Q
    ||| ||  |||| |||||||||||||||||| |||| |||| ||||||||||| || ||||||||| |||||    
T  22607933 gatctgctgaaccacctttatttttaatgcaatgtagtttatctttcctttaaatt-ctgcaattttaactt 22608003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 400
Target Start/End: Original strand, 20150422 - 20150588
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||   |||||||||||  |||||||||| ||||||||||||||| ||||||| |||| |||||||||||  ||||||||||| ||| ||| |    
T  20150422 tgtataaatagttgttttccatagggaaaacgggtctcaaatcacctatacataattctacaacactcgaagtaccgacgcgagagaaaaaagtcataca 20150521  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaa 400  Q
     |||| ||| |||||||||||| ||| ||||||||||||||| || | || |||| |||| ||||||    
T  20150522 aaatgcatgcaaaggatttgtcaaaccacctttatttttaatacaatataatttatcttttctttaa 20150588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 375
Target Start/End: Original strand, 13202052 - 13202192
Alignment:
Q  235 tgtataaataagagttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  |||||| ||||| ||||||  |||||||||||| |||| ||| ||||| |||| ||||| |||||| ||||||||||| ||| ||| |    
T  13202052 tgtataaatagtagtttttcataggaaaaacatgtcgcaaatcacttatagaaa-ttctacaacactcgaaataccggcgcgagagaaaatagttataca 13202150  T
Q  334 gaatgtatgtaaaggatttgtcgaactacctttatttttaat 375  Q
     ||||||||||||||||||||||||| |||||||||||||||    
T  13202151 taatgtatgtaaaggatttgtcgaaccacctttatttttaat 13202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 403
Target Start/End: Complemental strand, 17615439 - 17615274
Alignment:
Q  238 ataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaa 336  Q
    |||||||  ||||||||||||  |||||||||| | |||||| |||| ||| ||||| |||| ||||||||| || | |||| |||||||| | | | ||    
T  17615439 ataaatagtagttttccatagggaaaacgggtcacgaatcacttatagaaa-ttctacaacactcgaagtacaggcgggagaaaaaagagttacacataa 17615341  T
Q  337 tgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagtt 403  Q
    ||||||||||||||||||||||| ||||||||||| |||||| || | || |||||| |||||||||    
T  17615340 tgtatgtaaaggatttgtcgaacaacctttattttgaatgcaatgcagttaaccttttctttaagtt 17615274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 376
Target Start/End: Original strand, 22620063 - 22620153
Alignment:
Q  286 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatg 376  Q
    |||||||| |||| |||||||||| ||||||||||||| ||| ||  | |  ||||||||| |||||||||||| ||||||||||||||||    
T  22620063 aaattctacaacactcgaagtaccagagcgagagaaaatagttattcaaaccgtatgtaaaagatttgtcgaaccacctttatttttaatg 22620153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 13232737 - 13232801
Alignment:
Q  235 tgtataaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaaca 298  Q
    ||||||||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  13232737 tgtataaataatagttttccatagggaaaacggatcgcaaatcacctatgcataattctaaaaca 13232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  347 ggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 419  Q
    ||||||||||||| ||||||||||||||||||    | |||| |||| ||||||||| ||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 20886607 - 20886571
Alignment:
Q  361 acctttatttttaatgcattgtattttacctttcctt 397  Q
    |||||||||||||||||| || |||||||||||||||    
T  20886607 acctttatttttaatgcaatgcattttacctttcctt 20886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 180 - 424
Target Start/End: Original strand, 5599 - 5851
Alignment:
Q  180 tctacatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcac 278  Q
    |||| ||||||||||||||||| |||||||| ||||| |||||||||| |  |||||||||||||||||||||| ||||  ||||||||||| |||||||    
T  5599 tctatatggaaggagtgttgatcgtgggattagtttcattccaagttatttgctttgtataaataagagttttctatagggaaaacgggtcgtaaatcac 5698  T
Q  279 ctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgca 378  Q
    ||||||| |||||||||||  | |||||||||   ||||| |||||||| |||| |||||||||||||| |||||||| || ||||||||||||||||||    
T  5699 ctatacagaattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgtatgtaaagaatttgtcggaccacctttatttttaatgca 5798  T
Q  379 -ttg------tattttacctttcctttaagttcctgcaatttaaacttaatgc 424  Q
     |||      |||||| ||||| |||||||||  |||||||||||||||||||    
T  5799 cttgcattgttatttttccttttctttaagtttttgcaatttaaacttaatgc 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 183 - 469
Target Start/End: Complemental strand, 21077 - 20793
Alignment:
Q  183 acatggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccatagaaa-aacgggtcgcaaatcaccta 281  Q
    ||||||||||||||||||| |||||||| |||||||||||  ||| |  || ||||||||||  ||| ||||||||  | || |||||||||||||| ||    
T  21077 acatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaatagtagtcttccatagggacaatgggtcgcaaatcacgta 20979  T
Q  282 tacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaactacctttatttttaatgcattg 381  Q
    || | |||||||||||| | |||||||     |||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||||    
T  20978 ta-ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaaccacctttattttaaatgcattg 20880  T
Q  382 tattttacctttcctttaagttcctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgccaca 469  Q
     |||||  |||||||||||||| ||||| |||||||||||||| || |   | ||||||||||| |||||||||| ||||||||||||    
T  20879 cattttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacc-tttttctgtcaaaagacgccaca 20793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 187 - 347
Target Start/End: Complemental strand, 13151 - 12991
Alignment:
Q  187 ggaaggagtgttgattgtgggattcgtttctttccaagttagtatctttgtataaataagagttttccataga-aaaacgggtcgcaaatcacctataca 285  Q
    ||||||||||||||| |||||||| |||||||| |   ||| | ||| ||||||||||  ||||||||||||  ||||||||||||||||||||||| ||    
T  13151 ggaaggagtgttgatcgtgggattagtttctttactc-ttattttctatgtataaatagtagttttccatagggaaaacgggtcgcaaatcacctatgca 13053  T
Q  286 aaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaag 347  Q
     |||||||||||| |||||||||  | ||||||||||||||| |||||||||||||||||||    
T  13052 gaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaaag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 247 - 419
Target Start/End: Complemental strand, 17392 - 17221
Alignment:
Q  247 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaa 345  Q
    ||||||||||||  |||||||||| |||||||| |||| ||| || || |||| |||| ||||||| ||||||||||||||| ||| |||||||||||||    
T  17392 agttttccatagggaaaacgggtcacaaatcacttatagaaa-ttgtacaacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaa 17295  T
Q  346 aggatttgtcgaactacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 419  Q
    |||||||||||||| |||||||||||||| ||| || | |||| | || ||||||||| ||||| ||| |||||    
T  17294 aggatttgtcgaaccacctttatttttaaagcaatgcaatttatcatttctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 419
Target Start/End: Complemental strand, 4703 - 4546
Alignment:
Q  260 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaagaatgtatgtaaaggatttgtcgaac 359  Q
    |||||||||| |||||||| |||| ||| ||||| |||| | || ||||||| ||||||||||||||| ||| |||||| || |||| ||||||| ||||    
T  4703 aaaacgggtcacaaatcacttatagaaa-ttctacaacacttga-gtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaac 4606  T
Q  360 tacctttatttttaatgcattgtattttacctttcctttaagttcctgcaatttaaactt 419  Q
     |||||||||||||| ||| || | ||||   || ||||||||| ||||| ||| |||||    
T  4605 cacctttatttttaaagcaatgcaatttattatttctttaagtttctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 235 - 399
Target Start/End: Original strand, 374113 - 374275
Alignment:
Q  235 tgtataaataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaag 334  Q
    ||||||||||  ||||||||||||  |||  ||||||||||||| |||| ||| | ||| |||| || |||||| || ||||||||||||||| ||| |     
T  374113 tgtataaatagtagttttccatagggaaaacggtcgcaaatcacttatagaaa-tgctacaacactcaaagtacaggcgcgagagaaaagagt-atacaa 374210  T
Q  335 aatgtatgtaaaggatttgtcgaactacctttatttttaatgcattgtattttacctttccttta 399  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| || | |||| ||||||||||    
T  374211 aatgtatgtaaagtatttgtcgaaccacctttatttttaatgcaatgcaatttatctttccttta 374275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 388
Target Start/End: Complemental strand, 20725 - 20572
Alignment:
Q  235 tgtataaataagagttttccatagaaaa-acgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||| ||||||||||||  || |||||||||||||||| || | ||  |||||||||| |||||||||||| ||||||||||||||| ||| |    
T  20725 tgtataaataatagttttccataggcaagacgggtcgcaaatcacttacagaac-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 20627  T
Q  334 gaatgtatgt-aaaggatttgtcgaactacctttatttttaatgcattgtatttta 388  Q
     ||||||||| |||  ||||||| ||| ||||||| |||||||||| |||| ||||    
T  20626 taatgtatgtgaaataatttgtcaaaccaccttta-ttttaatgcaatgtaattta 20572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 371
Target Start/End: Original strand, 859 - 996
Alignment:
Q  235 tgtataaataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcgaagtaccggagcgagagaaaagagtgataaa 333  Q
    ||||||||||  ||||||||||| | ||||||||| ||||||||| |||| ||| ||| |||||| |||||||||||| |||||| | |||||| ||| |    
T  859 tgtataaatagtagttttccatacggaaaacgggttgcaaatcacttatagaaa-ttccaaaacactcgaagtaccggcgcgagaaagaagagttataca 957  T
Q  334 gaatgtatgt-aaaggatttgtcgaactacctttatttt 371  Q
     ||||||||| ||| ||||||| |||| |||||||||||    
T  958 taatgtatgtaaaatgatttgttgaacaacctttatttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 5989 - 6035
Alignment:
Q  181 ctacatggaaggagtgttgattgtgggattcgtttctttccaagtta 227  Q
    |||||||||| ||||| |||| |||||||| ||||||||||||||||    
T  5989 ctacatggaacgagtgctgatcgtgggattagtttctttccaagtta 6035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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