View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_50 (Length: 238)
Name: NF11473_low_50
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1965977 - 1966189
Alignment:
| Q |
1 |
ctagacctggtgtcaagttcactgaaccacaggtatatagatatcatgctattgtttcctaaaatgttaataagaaattggataatggttcaaaacttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1965977 |
ctagacctggtgtcaagttcactgaaccacaggtatatagatatcatgctattgtttcctaaaatgttaataagaaattggataatggttcaaaacttgt |
1966076 |
T |
|
| Q |
101 |
tgttaggctgcaaactttatattgcagacaaatgcaggcaaatgcagccaatggaggcattgcatatacaatgtagttacgaaacctctaaaacttttat |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1966077 |
tgttaggctgcaaactttatattgcaga----------caaatgcagccaatggaggcattgcatatacaatgtagttacgaaacctctaaaacttttat |
1966166 |
T |
|
| Q |
201 |
aatgcgaacacaattgtagctat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
1966167 |
aatgcgaacacaattgtagctat |
1966189 |
T |
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