View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11473_low_53 (Length: 235)
Name: NF11473_low_53
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_53 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 55211420 - 55211195
Alignment:
| Q |
10 |
gcacagagggatcagtatcaattagagggtctacggcattagcagtgtatgaaactggaggagtagccgcggctggactaagcttaaaagtagggtcaag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55211420 |
gcacagagggatcagtatcaattagagggtctacggcattagcagtgtatgaaactggaggagtagccgtggctggactaagcttaaaagtagggtcaag |
55211321 |
T |
|
| Q |
110 |
gttaacaaaatctgaatcattgtttctaatcaatggaacattttgaaatgagggttcagtgtgcacattttcaaatgaaaaatctgaatcattgtttgga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55211320 |
gttaacaaaatctgaatcattgtttctaatcaatggaacattttgaaatgagggttcagtgtgcacagtttcaaatgaaaaatctgaatcattgtttgga |
55211221 |
T |
|
| Q |
210 |
atcataggaacattcatacgcatagc |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
55211220 |
atcataggaacattcatacgcatagc |
55211195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University