View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11473_low_54 (Length: 234)
Name: NF11473_low_54
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_54 |
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| [»] chr4 (7 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0083 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 38226060 - 38225846
Alignment:
| Q |
20 |
aacaagaaaaaggtgtatagtagcttgtttaggaagttaaatatggtataatagattaatagcttgttttgcgaaatatgtggatcatgttttcaggatg |
119 |
Q |
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| T |
38226060 |
aacaagaaaaaggtgtatagtagcttgtttaagaagttaaatatggtataatagattaatagcttgttttgcgaaatatgtggatcatgttttcaggatg |
38225961 |
T |
|
| Q |
120 |
gcagagttatatgttcctcaataccaagttacggaaatgggaatgaagctggaaatgagacaggctacattgtaggaatgtccacatgttatcctaaacc |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38225960 |
gcagagttatatgttcctctataccaagttacggaaatggaaatgaagctgggaatgagacaggctacattgtaggaatgtccacatgttatcctaaacc |
38225861 |
T |
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| Q |
220 |
aggttctgtcaagat |
234 |
Q |
| |
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||||||||||||||| |
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| T |
38225860 |
aggttctgtcaagat |
38225846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 79 - 234
Target Start/End: Complemental strand, 38252913 - 38252758
Alignment:
| Q |
79 |
tagcttgttttgcgaaatatgtggatcatgttttcaggatggcagagttatatgttcctcaataccaagttacggaaatgggaatgaagctggaaatgag |
178 |
Q |
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|||||||||||| ||||| ||||||| ||||||||||||||| || ||||||||||| || ||||||| ||||||||| || | |||||| |||||||| |
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| T |
38252913 |
tagcttgttttgtgaaatttgtggattatgttttcaggatgggagggttatatgttcttctataccaaattacggaaagggaagtgaagcaggaaatgaa |
38252814 |
T |
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| Q |
179 |
acaggctacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38252813 |
tcaggctacattgtaggaatgtccacatgttatcctaaaccaggttctgttaagat |
38252758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 38213514 - 38213361
Alignment:
| Q |
81 |
gcttgttttgcgaaatatgtggatcatgttttcaggatggcagagttatatgttcctcaataccaagttacggaaatgggaatgaagctggaaatgagac |
180 |
Q |
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||||||||| ||||||||||||| ||||||||||||||| || ||||||||||| || ||||||||||| |||| ||| |||||||| ||||||||| | |
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| T |
38213514 |
gcttgttttctgaaatatgtggattatgttttcaggatggaagggttatatgttcttctataccaagttatggaactggaaatgaagcaggaaatgaggc |
38213415 |
T |
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| Q |
181 |
aggctacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
234 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213414 |
aaactatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
38213361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 38219893 - 38219759
Alignment:
| Q |
100 |
tggatcatgttttcaggatggcagagttatatgttcctcaataccaagttacggaaatgggaatgaagctggaaatgagacaggctacattgtaggaatg |
199 |
Q |
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||||| |||||||||||||| || |||||||| || ||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
38219893 |
tggattatgttttcaggatgagagggttatatgctcttcaataccaagatatggaaatggaaacgaagctggaaatgagacaggctacattgtaggaatg |
38219794 |
T |
|
| Q |
200 |
tccacatgttatcctaaaccaggttctgtcaagat |
234 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
38219793 |
tccacatgttatcctaaaccaggttctatcaagat |
38219759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 38237418 - 38237265
Alignment:
| Q |
81 |
gcttgttttgcgaaatatgtggatcatgttttcaggatggcagagttatatgttcctcaataccaagttacggaaatgggaatgaagctggaaatgagac |
180 |
Q |
| |
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|||||||||| ||||| ||||||| ||||||||||||||| || |||||||||||||| ||||||||||| |||||||| | ||||| |||||||| | |
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| T |
38237418 |
gcttgttttgtgaaatttgtggattatgttttcaggatggaagggttatatgttcctctataccaagttatggaaatggaagcgaagcaggaaatgaagc |
38237319 |
T |
|
| Q |
181 |
aggctacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
234 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38237318 |
gggatacattgtaggaatgtccacttgttatcctaaaccaggttctgtcaagat |
38237265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 38242655 - 38242465
Alignment:
| Q |
44 |
ttgtttaggaagttaaatatggtataatagattaatagcttgttttgcgaaatatgtggatcatgttttcaggatggcagagttatatgttcctcaatac |
143 |
Q |
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||||||| ||||||||| |||||||||||||| |||| ||||||||| ||||| ||||| ||||||||||||||| || ||||||||||| || | || |
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| T |
38242655 |
ttgtttaagaagttaaacatggtataatagatcaataacttgttttgtgaaattgatggattatgttttcaggatgggagggttatatgttcttccaaac |
38242556 |
T |
|
| Q |
144 |
caagttacggaaatgggaatgaagctggaaatgagacaggctacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
234 |
Q |
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||||||| |||||||| | ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38242555 |
caagttatggaaatggaagcgaagcaggaaatgaagtgggatacattgtaggaatgtccacatgttatcctaaaccaggttcaatcaagat |
38242465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 85 - 234
Target Start/End: Complemental strand, 38247876 - 38247727
Alignment:
| Q |
85 |
gttttgcgaaatatgtggatcatgttttcaggatggcagagttatatgttcctcaataccaagttacggaaatgggaatgaagctggaaatgagacaggc |
184 |
Q |
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|||||| || || ||||||| ||||||||||||||| || ||||||||||| || ||||||||||| |||| || |||||||| ||||||||| || | |
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| T |
38247876 |
gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc |
38247777 |
T |
|
| Q |
185 |
tacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
234 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247776 |
tatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
38247727 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 17453827 - 17453673
Alignment:
| Q |
80 |
agcttgttttgcgaaatatgtggatcatgttttcaggatggcagagttatatgttcctcaataccaagttacggaaatgggaatgaagctggaaatgaga |
179 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||| || |||||||||| ||| |||| |||||||| ||||||||| |
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| T |
17453827 |
agcttgttttgtgaaatttgtggattatgttttcaggatgggagagttatatgttcttctgtaccaagttatggacatggaaatgaagcaggaaatgagg |
17453728 |
T |
|
| Q |
180 |
caggctacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
234 |
Q |
| |
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|||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
17453727 |
cagggtacattgtaggaatgtctacttgttatcctaaaccaggttctgtcaagat |
17453673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 17432852 - 17432787
Alignment:
| Q |
169 |
tggaaatgagacaggctacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
234 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
17432852 |
tggaaatgaggcagggtacattgtaggaatgtctacttgttatcctaaaccaggttctgtcaagat |
17432787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 17432916 - 17432859
Alignment:
| Q |
93 |
aaatatgtggatcatgttttcaggatggcagagttatatgttcctcaataccaagtta |
150 |
Q |
| |
|
|||| ||||||| ||||||||||||||| || ||||||||||| || | ||||||||| |
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|
| T |
17432916 |
aaatttgtggattatgttttcaggatgggagggttatatgttcttctacaccaagtta |
17432859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 11475169 - 11475289
Alignment:
| Q |
114 |
aggatggcagagttatatgttcctcaataccaagttacggaaatgggaatgaagctggaaatgagacaggctacattgtaggaatgtccacatgttatcc |
213 |
Q |
| |
|
||||||| |||||||||||| | ||||| |||| |||||||| || | |||| |||||||||| ||| || |||||||||||||| |||||||| || |
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|
| T |
11475169 |
aggatgggagagttatatgtacttcaatcccaaagtacggaaaaggaaggaaagcaggaaatgagaaagggtatattgtaggaatgtcaacatgttaccc |
11475268 |
T |
|
| Q |
214 |
taaaccaggttctgtcaagat |
234 |
Q |
| |
|
||||||||||||| ||||||| |
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|
| T |
11475269 |
taaaccaggttctatcaagat |
11475289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 11486400 - 11486522
Alignment:
| Q |
112 |
tcaggatggcagagttatatgttcctcaataccaagttacggaaatgggaatgaagctggaaatgagacaggctacattgtaggaatgtccacatgttat |
211 |
Q |
| |
|
||||||||| |||||||||||| | ||||| |||| || ||||| || || ||| |||||||||| ||| || ||||||| ||||| |||||||| |
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| T |
11486400 |
tcaggatggaagagttatatgtacttcaatcccaaaatatggaaaaggaaagagagcaggaaatgagaaaggatatgttgtaggcatgtcaacatgttac |
11486499 |
T |
|
| Q |
212 |
cctaaaccaggttctgtcaagat |
234 |
Q |
| |
|
||||||||||||||| ||||||| |
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|
| T |
11486500 |
cctaaaccaggttctatcaagat |
11486522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 11463326 - 11463394
Alignment:
| Q |
164 |
gaagctggaaatgagacaggctacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaag |
232 |
Q |
| |
|
||||| |||||||||| ||| || ||||||||||||| || ||||| ||||||||||||||| ||||| |
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|
| T |
11463326 |
gaagcaggaaatgagaaagggtatgttgtaggaatgtcaacttgttaccctaaaccaggttctatcaag |
11463394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 49027 - 49109
Alignment:
| Q |
152 |
ggaaatgggaatgaagctggaaatgagacaggctacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
234 |
Q |
| |
|
|||||||| || ||||| |||||||| | ||| || |||||||||||||||| ||||||||| ||||||||||| ||||||| |
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|
| T |
49027 |
ggaaatggaaaggaagcaggaaatgaaaaaggatatgttgtaggaatgtccacttgttatcctcaaccaggttctatcaagat |
49109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 21547845 - 21547927
Alignment:
| Q |
152 |
ggaaatgggaatgaagctggaaatgagacaggctacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat |
234 |
Q |
| |
|
|||||||| || ||||| |||||||| | ||| || ||||||||||| |||| ||||||||| ||||||||||| ||||||| |
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|
| T |
21547845 |
ggaaatggaaaggaagcaggaaatgaaaaagggtatgttgtaggaatgaccacttgttatcctcaaccaggttctatcaagat |
21547927 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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