View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_55 (Length: 228)
Name: NF11473_low_55
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 40630267 - 40630404
Alignment:
| Q |
11 |
aagaactgaatttccaacccagattgcattcaaatatcaagataaataatttacggaaagaaaaatccacacacctcttccggatcaactggctcagcat |
110 |
Q |
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| T |
40630267 |
aagaactgaatttccaacgcagattgcattcaaatatcaagataaataatttacggaaagaaaaatccaca--cctcttccggatcaactggctcagcat |
40630364 |
T |
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| Q |
111 |
acacaccatatgtgtccttcctgccatcatccaagttaag |
150 |
Q |
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| T |
40630365 |
acacaccatatgtgtccttcctgccatcatccaagttaag |
40630404 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 20774118 - 20774186
Alignment:
| Q |
68 |
aagaaaaatccacacacctcttccggatcaactggctcagcatacacaccatatgtgtccttcctgcca |
136 |
Q |
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| T |
20774118 |
aagaaaattccacacacctcttcaggatcaaccggctccgcaaaaacaccatacgtgtccttcctgcca |
20774186 |
T |
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