View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_high_10 (Length: 433)
Name: NF11474_high_10
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 36604878 - 36605278
Alignment:
| Q |
16 |
acatcaaaacataaatcacttaaattcaaactcaatctaaaggaataaattttacaaaaatcactgaaaatcttatttgataaacccttaccctaacaca |
115 |
Q |
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| T |
36604878 |
acatcaaaacataaatcacttaaattcaaactcaatctaaaggaatcaattttacaaaaatcactgaaaatctcatttgataaacccttaccctaacaca |
36604977 |
T |
|
| Q |
116 |
cacagacaaatacaaactttgttcaagatggtcatatataaacgaagnnnnnnngaatcaaatcactattgtggaacagaaaaccaacataaatcacatt |
215 |
Q |
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| T |
36604978 |
cacagacaaatacaaactttgttcaagatggtcatatataaacgaagaaaaaaagaatcaaatcactattgtggaacagaaaaccaacataaatcacatt |
36605077 |
T |
|
| Q |
216 |
cacacgccaaaaatattctgagaataagagcgaaatgaaaatttgcagaggcgagataataaagcgtgaatttacggtacctggtagagactcttttgag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36605078 |
cacacgccaaaaatattctgagaataagagcgaaatgaaaatttgcagaggcgagataataaagcgtgaatttacggtacctggtagagactcttttgag |
36605177 |
T |
|
| Q |
316 |
gttgatcttcaatttcttcatcatcggaaaccctagatttcttattcggcgccatttttcacacagagagatttgtttgatggatttgatagtgcgttat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36605178 |
gttgatcttcaatttcttcatcatcggaaaccctagatttcttattcggcgccatttttcacacagagagatttgtttgatggatttgatagtgcgttat |
36605277 |
T |
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| Q |
416 |
t |
416 |
Q |
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| T |
36605278 |
t |
36605278 |
T |
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