View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_high_12 (Length: 396)
Name: NF11474_high_12
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_high_12 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 17522794 - 17523131
Alignment:
| Q |
1 |
tgtcaaccatatctagcatcacactgctcaacaagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggttag |
100 |
Q |
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| T |
17522794 |
tgtcaactatatctagcatcacactgctcaacaagtttaatgtgaaagagattggtactctgcaagaaaaagtggttgagatggggatggatgaggttag |
17522893 |
T |
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| Q |
101 |
tatatattcaatgtgtaaataaacttagtcttgtctaaaatttctgatttgtatttttagatttatatgcnnnnnnnnngtgctattttgtaacagggaa |
200 |
Q |
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| T |
17522894 |
tgtatatacaatgtgtaaacaaactcagtcatgtctaaaatttctgatttgttcttttagatttatatg--tttcttttgtgcttttttgtaacagggaa |
17522991 |
T |
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| Q |
201 |
tcaagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaagcgaaattgatatgagaggaataacaagacagatctttt |
300 |
Q |
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| T |
17522992 |
tcaagttgctgaaggcttctctgcaatccaagatggtcttgacaagtgtttttctcaagaagcgaaattgataagagaggaagaacaagacggatctttt |
17523091 |
T |
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| Q |
301 |
aa-----cttcaacatgttaagaagataaaataatgggga |
335 |
Q |
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| T |
17523092 |
aattcatcttcaaaatgttaagaagataaaataatgggga |
17523131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 17016236 - 17016177
Alignment:
| Q |
203 |
aagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaag |
262 |
Q |
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| T |
17016236 |
aagttgcttaaggcttctctgcaatcaaagatggtattgacgagtgttttcatcaagaag |
17016177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 17546673 - 17546614
Alignment:
| Q |
203 |
aagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaag |
262 |
Q |
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| T |
17546673 |
aagttgcttaaggcttctctgcaatcaaagatggtattgacgagtgttttcatcaagaag |
17546614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 52145088 - 52144989
Alignment:
| Q |
186 |
ttttgtaacagggaatcaagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaagcgaaattgatatgagaggaataa |
285 |
Q |
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| T |
52145088 |
ttttgtaacagggtatcaagttgctaaaggcttctctgcaatccaaaatggtattgacaagtgttttcctcaagaaggaaaattgatatgcaaggaataa |
52144989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 52145252 - 52145174
Alignment:
| Q |
19 |
tcacactgctcaacaagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
97 |
Q |
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| T |
52145252 |
tcacactgttgaacaaattcaaagtgaaagagattgaaaccttgcaagaaaaggttgttgagatgggaatagatgaggt |
52145174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8625 - 8529
Alignment:
| Q |
1 |
tgtcaaccatatctagcatcacactgctcaacaagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
97 |
Q |
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| T |
8625 |
tgtcaaccatatcaagcattactttgctgaacaaattcaatatcaaggaggttggtaccttgcaggaaaaggttgttgagatgggaatggatgaggt |
8529 |
T |
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