View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11474_high_17 (Length: 330)
Name: NF11474_high_17
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 2008357 - 2008050
Alignment:
| Q |
1 |
ttcaacaattgatgctttagattgccatcagctatcagtcaaagtattgtgaactctccataatatatttagtgaaagacattacgaaacaatttgtaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2008357 |
ttcaacaattgatgctttagattgccatcagctatcagtcaaagtattgtgaattctccataatatatttagtgaaagacattacgaaacaatttgtaga |
2008258 |
T |
|
| Q |
101 |
gccttaggatgaacatctaatttgtgggtcataagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaaagctccatagaaa |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2008257 |
gccttaggatgaacatccaatttgtgggtcctaagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaaaactccatagaaa |
2008158 |
T |
|
| Q |
201 |
gacacctcctcatccctacctaactagacatgatannnnnnnggtaaaacgggtttacaattccatcaaacatgaatgaaataaaaccatcaaatactgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2008157 |
gacacctcctcatccctacctaactagacatgatatttttttggtaaaacgggtttacacttccatcaaacatgaatgaaataaaacaatcaaatactgc |
2008058 |
T |
|
| Q |
301 |
agtgacct |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
2008057 |
agtgacct |
2008050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 2003774 - 2003667
Alignment:
| Q |
124 |
gtgggtcataagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaaagctccatagaaagacacc-tcctcatccctaccta |
222 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||| || | |||||||||||| |||||||| |||||| |
|
|
| T |
2003774 |
gtgggtcctaagctataagactctaacatctcctatcaaaatcatgcgatcttagaacatcaaaacct-cgtagaaagacaccaccctcatccttaccta |
2003676 |
T |
|
| Q |
223 |
actagacat |
231 |
Q |
| |
|
|||| |||| |
|
|
| T |
2003675 |
actatacat |
2003667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 2003238 - 2003127
Alignment:
| Q |
120 |
atttgtgggtcataagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaaagctccatagaaagacacc-tcctcatcccta |
218 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||||||| |||||||||||||| |||||||||||| ||||| | | |||||||||||| ||||||| || |
|
|
| T |
2003238 |
atttgtgggtcctaagcaataagactttaacatctcttatcaaaatcatgcgatcttagaacactaaaag-ttcgtagaaagacaccaccctcatcatta |
2003140 |
T |
|
| Q |
219 |
cctaactagacat |
231 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
2003139 |
cctaactatacat |
2003127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University