View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_high_19 (Length: 308)
Name: NF11474_high_19
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 30404415 - 30404138
Alignment:
| Q |
14 |
agaggaattgcagtggaattggtcacacacacgatttgtatatcatcatcataggtacaaattgaaacttccttcacatgactgcacattctagtctagc |
113 |
Q |
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| T |
30404415 |
agaggaattgcagtggaattggtcacacacacgatttatatatcatcatcataggtacaaattgaaacttccttcacatgactgcacattctagtctagc |
30404316 |
T |
|
| Q |
114 |
agcaatttggatgtcagnnnnnnntactactaataaatcaatacaatcgtagtannnnnnnngttctctggtagagcaatacaaagcatgttacttgggt |
213 |
Q |
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| T |
30404315 |
agcaatttggatgtcagaaaaaaatactactaataaatcaatacaatcgtagtattttttttgttctctggtagagcaatacaaagcatgttacttgggt |
30404216 |
T |
|
| Q |
214 |
tagagcattttaattgccattcacttgctcatattccacaacttttatttgaaggcgttttatcttagcgcctccttt |
291 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30404215 |
tagagcattttaattgccattcacttgcccatattccacaacttttatttgaaggcgttttatcttagcgcctccttt |
30404138 |
T |
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