View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11474_high_23 (Length: 276)

Name: NF11474_high_23
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11474_high_23
NF11474_high_23
[»] chr5 (9 HSPs)
chr5 (12-257)||(39457829-39458074)
chr5 (25-258)||(39464104-39464337)
chr5 (12-160)||(39470293-39470441)
chr5 (12-234)||(39475923-39476145)
chr5 (18-234)||(39451417-39451633)
chr5 (12-234)||(39460664-39460886)
chr5 (22-232)||(39472449-39472659)
chr5 (12-218)||(39455060-39455266)
chr5 (12-238)||(39486878-39487104)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 39457829 - 39458074
Alignment:
Q  12 agagacaaaggagtgaacggcataggattctagctcttcaaatgaatttacaataatggcatcagcattcttgagacctttcgcatagctcatgaagaag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39457829 agagacaaaggagtgaacggcataggattctagctcttcaaatgaatttacaataatggcatcagcattcttgagacctttcgcatagctcatgaagaag 39457928  T
Q  112 gactcccattccttgcatagcactgaactgggcaaagtgtttgaaggaactgagttagcgaaacttgggatggccaactcagtctgctgcagcaactgag 211  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  39457929 gactcccattccttgcgtagcactgaactgggcaaagtgtttgaaggaactgagttagcgaaacctcggatggccaactcagtctgctgcagcaactgag 39458028  T
Q  212 tggaatcaacattgtctcgttcaaacatattatgaatatgaagatt 257  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  39458029 tggaatcaacgttgtctcgttcaaacatattatgaatatgaagatt 39458074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 25 - 258
Target Start/End: Original strand, 39464104 - 39464337
Alignment:
Q  25 tgaacggcataggattctagctcttcaaatgaatttacaataatggcatcagcattcttgagacctttcgcatagctcatgaagaaggactcccattcct 124  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||   ||||||| |||||||| ||||| |||||||||||||| || |||||  ||||||    
T  39464104 tgaactgcatgggattctagctcttcaaatgaatttactataaaaccatcagccttcttgaggccttttgcatagctcatgaaaaacgactcggattcct 39464203  T
Q  125 tgcatagcactgaactgggcaaagtgtttgaaggaactgagttagcgaaacttgggatggccaactcagtctgctgcagcaactgagtggaatcaacatt 224  Q
    ||| ||  |||| ||||||||| |  |||| |||||| |||||||||||||| |||| || ||| |||||| | |||  || |||||| ||||| || ||    
T  39464204 tgcgtattactgcactgggcaacgattttgtaggaacggagttagcgaaactcgggagggacaattcagtcagttgctccagctgagttgaatcgacgtt 39464303  T
Q  225 gtctcgttcaaacatattatgaatatgaagattc 258  Q
    |||||||||||||| | | |||||||||||||||    
T  39464304 gtctcgttcaaacaaagtgtgaatatgaagattc 39464337  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 39470293 - 39470441
Alignment:
Q  12 agagacaaaggagtgaacggcataggattctagctcttcaaatgaatttacaataatggcatcagcattcttgagacctttcgcatagctcatgaagaag 111  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| ||||| ||  |||||||||||| |    
T  39470293 agagaaaaaggagtgaaccgcataggattctagctcttcaaatgaattgacaataatgccatcggcattcttgaggcctttggcgaagctcatgaagacg 39470392  T
Q  112 gactcccattccttgcatagcactgaactgggcaaagtgtttgaaggaa 160  Q
    || |   ||||||||  |||||||||||||||||| | |||| ||||||    
T  39470393 gatttgtattccttgtgtagcactgaactgggcaacgagtttaaaggaa 39470441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 39476145 - 39475923
Alignment:
Q  12 agagacaaaggagtgaacggcataggattctagctcttcaaatgaatttacaataatggcatcagcattcttgagacctttcgcatagctcatgaagaag 111  Q
    ||||| ||| |||||||| ||||  |||||||||||||||||||| ||||| |||||| |||   | |||||||| ||| | |||   |||||||| ||     
T  39476145 agagaaaaaagagtgaaccgcatgtgattctagctcttcaaatgagtttactataatgccatttactttcttgaggcctcttgcaagtctcatgaaaaac 39476046  T
Q  112 gactcccattccttgcatagcactgaactgggcaaagtgtttgaaggaactgagttagcgaaacttgggatggccaactcagtctgctgcagcaactgag 211  Q
    |||||||||||||||  ||||||  |||||||||| |  ||||||||||| | ||| |||||||| |||||||| | |||  ||||| |||||| |||||    
T  39476045 gactcccattccttgtgtagcacaaaactgggcaatgattttgaaggaacggggttggcgaaactcgggatggctacctcgttctgcagcagcagctgag 39475946  T
Q  212 tggaatcaacattgtctcgttca 234  Q
    | ||||| |||||||||||||||    
T  39475945 tcgaatcgacattgtctcgttca 39475923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 39451633 - 39451417
Alignment:
Q  18 aaaggagtgaacggcataggattctagctcttcaaatgaatttacaataatggcatcagcattcttgagacctttcgcatagctcatgaagaaggactcc 117  Q
    |||||||||||| || |  |||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||      |||||||||| || |  |||    
T  39451633 aaaggagtgaaccgcgtgtgattctagctcttcaaatgaatttactataatgccatcggcattcttgaggccttctatgaagctcatgaaaaacggttcc 39451534  T
Q  118 cattccttgcatagcactgaactgggcaaagtgtttgaaggaactgagttagcgaaacttgggatggccaactcagtctgctgcagcaactgagtggaat 217  Q
    |||||||||| ||| || ||||  ||||| | | |||||||||   ||| ||||||| | |||||||| |||||  |||||||| |||||||||| ||||    
T  39451533 cattccttgcttaggacggaaccaggcaatgagcttgaaggaaacaagtgagcgaaagtcgggatggctaactctttctgctgctgcaactgagttgaat 39451434  T
Q  218 caacattgtctcgttca 234  Q
    |||| ||||||||||||    
T  39451433 caacgttgtctcgttca 39451417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 39460886 - 39460664
Alignment:
Q  12 agagacaaaggagtgaacggcataggattctagctcttcaaatgaatttacaataatggcatcagcattcttgagacctttcgcatagctcatgaagaag 111  Q
    ||||| ||| || ||||| |||| ||||||||||||||||||||||||||| |||||  |||  || |||||||| ||    |||||| |||| || |||    
T  39460886 agagaaaaatgattgaactgcatgggattctagctcttcaaatgaatttactataataccatttgctttcttgaggccaccagcatagttcataaaaaag 39460787  T
Q  112 gactcccattccttgcatagcactgaactgggcaaagtgtttgaaggaactgagttagcgaaacttgggatggccaactcagtctgctgcagcaactgag 211  Q
    || ||||||||||||  |||||  ||||||||||  | || |  |||||| ||||| |||||| |||| |||||||| |||||||||||| ||||||||     
T  39460786 gattcccattccttgtttagcatggaactgggcagcgagtatataggaaccgagttggcgaaagttggtatggccaattcagtctgctgctgcaactgat 39460687  T
Q  212 tggaatcaacattgtctcgttca 234  Q
    | ||||| || ||||||| ||||    
T  39460686 ttgaatctacgttgtctctttca 39460664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 39472659 - 39472449
Alignment:
Q  22 gagtgaacggcataggattctagctcttcaaatgaatttacaataatggcatcagcattcttgagacctttcgcatagctcatgaagaaggactcccatt 121  Q
    |||||||| || | ||||||||||||||||||||||||||| |||| | ||||||| |||||||| ||||||  ||||| ||| |  || ||||||||||    
T  39472659 gagtgaactgcgtgggattctagctcttcaaatgaatttactataaagccatcagcgttcttgaggcctttccaatagcccatcataaacgactcccatt 39472560  T
Q  122 ccttgcatagcactgaactgggcaaagtgtttgaaggaactgagttagcgaaacttgggatggccaactcagtctgctgcagcaactgagtggaatcaac 221  Q
    | |||| |||||| | ||||||||| |  ||||  |||||  ||||||||||||| ||||  ||||| |||||  | || | ||||| ||| ||||  ||    
T  39472559 ctttgcttagcacagcactgggcaatgcttttgttggaaccaagttagcgaaactcgggacagccaagtcagtgagttgtaacaacttagttgaatagac 39472460  T
Q  222 attgtctcgtt 232  Q
    |||||||||||    
T  39472459 attgtctcgtt 39472449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 39455266 - 39455060
Alignment:
Q  12 agagacaaaggagtgaacggcataggattctagctcttcaaatgaatttacaataatggcatcagcattcttgagacctttcgcatagctcatgaagaag 111  Q
    ||||| |||||||||||| ||||  ||||| || ||||||||||||||||| || ||  |||| ||||||||||| ||| | ||||||||| |||| |      
T  39455266 agagaaaaaggagtgaaccgcatgagattcaagatcttcaaatgaatttactatgattccatcggcattcttgaggcctcttgcatagctcttgaaaacc 39455167  T
Q  112 gactcccattccttgcatagcactgaactgggcaaagtgtttgaaggaactgagttagcgaaacttgggatggccaactcagtctgctgcagcaactgag 211  Q
    |  | ||||||||||| |||||  ||||  ||||| | |||||||||||   | || | |||| | || ||||| |||||  ||||||||||||||||||    
T  39455166 ggtttccattccttgcttagcagggaacgtggcaatgagtttgaaggaaacaaattggtgaaagtcggaatggctaactcgttctgctgcagcaactgag 39455067  T
Q  212 tggaatc 218  Q
    | |||||    
T  39455066 ttgaatc 39455060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 39487104 - 39486878
Alignment:
Q  12 agagacaaaggagtgaacggcataggattctagctcttcaaatgaatttacaataatggcatcagcattcttgagacctttcgcatagctcatgaagaag 111  Q
    ||||| |||||| ||||| ||||  ||||||| |||||||||||||||||| ||||||||||  || || ||||  ||    ||| || ||||||| ||     
T  39487104 agagaaaaaggattgaacagcatgtgattctaactcttcaaatgaatttactataatggcatttgcttttttgatgccaccggcaaagttcatgaaaaac 39487005  T
Q  112 gactcccattccttgcatagcactgaactgggcaaagtgtttgaaggaactgagttagcgaaacttgggatggccaactcagtctgctgcagcaactgag 211  Q
    || ||  ||||||||  |||||   |||||||||| | |||    ||||  ||||| || |||||||||||||| | |||  ||||||||||||||||||    
T  39487004 gattcatattccttgtgtagcaggaaactgggcaacgagttaattggaatcgagttggcaaaacttgggatggctacctcgttctgctgcagcaactgag 39486905  T
Q  212 tggaatcaacattgtctcgttcaaaca 238  Q
    | ||||| |  ||||||||||||||||    
T  39486904 ttgaatcgatgttgtctcgttcaaaca 39486878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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