View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_high_29 (Length: 234)
Name: NF11474_high_29
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 35204583 - 35204784
Alignment:
| Q |
17 |
agacaaagataccatgtttcattgcaaagatatgcgaaatatagaaggatataagtttataaaaacactaataaccagttttagtgtagataaaaccact |
116 |
Q |
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| T |
35204583 |
agacaaagataccatgtttcattgcaaagatatgcgaaatatagaaggttataagtttataaaaacactaataaccagttttagtgtagataaaaccact |
35204682 |
T |
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| Q |
117 |
atagtgagtatagttaattagcttaggattaactactacaattatttgcggctaattaaagttagtagcaagaggtaacatttaaatgttcataaaggat |
216 |
Q |
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| T |
35204683 |
atagtgagtatagttaattagcttaggattaactactacaattatttgcggc----taaagttagtagcaagaggtaacatttaaatgttcataaaggat |
35204778 |
T |
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| Q |
217 |
ggtttt |
222 |
Q |
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|||||| |
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| T |
35204779 |
ggtttt |
35204784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 22471824 - 22471864
Alignment:
| Q |
130 |
ttaattagcttaggattaactactacaattatttgcggcta |
170 |
Q |
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| T |
22471824 |
ttaattagcttagtattaactacaacaattatttgcagcta |
22471864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 32474866 - 32474818
Alignment:
| Q |
29 |
catgtttcattgcaaagatatgcgaaatatagaaggatataagtttata |
77 |
Q |
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|||||||||||||||| |||| | |||||| |||||||||||| ||||| |
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| T |
32474866 |
catgtttcattgcaaatatatactaaatatggaaggatataagcttata |
32474818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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