View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11474_high_5 (Length: 512)

Name: NF11474_high_5
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11474_high_5
NF11474_high_5
[»] chr2 (1 HSPs)
chr2 (19-439)||(32986120-32986541)
[»] chr5 (3 HSPs)
chr5 (447-500)||(30441314-30441367)
chr5 (446-501)||(37720032-37720087)
chr5 (437-502)||(9263661-9263726)
[»] chr4 (1 HSPs)
chr4 (446-499)||(34703771-34703824)
[»] chr1 (6 HSPs)
chr1 (446-499)||(28549377-28549430)
chr1 (446-499)||(41866988-41867041)
chr1 (446-502)||(25867306-25867362)
chr1 (446-479)||(4328863-4328896)
chr1 (446-499)||(35161958-35162011)
chr1 (446-502)||(16961675-16961731)
[»] chr7 (4 HSPs)
chr7 (446-502)||(20389918-20389974)
chr7 (450-497)||(33865605-33865651)
chr7 (445-499)||(34575601-34575655)
chr7 (446-499)||(13946651-13946704)
[»] chr6 (8 HSPs)
chr6 (446-502)||(4434991-4435047)
chr6 (435-502)||(2314484-2314551)
chr6 (450-499)||(11074870-11074918)
chr6 (446-502)||(11178362-11178418)
chr6 (446-502)||(28057050-28057106)
chr6 (437-500)||(32444469-32444532)
chr6 (437-471)||(7536967-7537001)
chr6 (446-502)||(4091341-4091397)
[»] chr3 (6 HSPs)
chr3 (446-502)||(46595792-46595848)
chr3 (446-497)||(30766053-30766104)
chr3 (446-499)||(4865124-4865177)
chr3 (446-499)||(55041525-55041578)
chr3 (451-499)||(50831196-50831244)
chr3 (451-499)||(50844609-50844657)
[»] chr8 (1 HSPs)
chr8 (446-499)||(1662597-1662650)


Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 32986541 - 32986120
Alignment:
Q  19 atattagacaaaatatggtgtgtttataaatggagataatcatcatcagttttgtaaggatgagttatgttccaaattcaataagatattcgagctttac 118  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||   ||||||||    
T  32986541 atattagataaaatatggtgtgtttataaatggagacaatcatcatcagttttgtaaggatgaattatgttccaaattcaacaagatatcaaagctttac 32986442  T
Q  119 tatttagtttttgttatcagacccattcagtgtttatgttcatgaatcaagctcaatagtgttggttataaggatgtgtatgttaaa-gatgagttatac 217  Q
    ||||| ||||||| |||||||||||| ||  ||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||    
T  32986441 tatttggtttttgctatcagacccatccaccgtttatgtctatgaatcaagctcaatagtattggtcataaggatgtgtatgttaaaagatcagttatac 32986342  T
Q  218 tctaaatagaaacaacaatttacttttagttagatcgtggtctaatcgattagtgaagattcctaattgattagtagagtagaaacaagattgtagctga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32986341 tctaaatagaaacaacaatttacttttagttagatcgtggtctaatcgattagtgaagattcctaattgattagtagagtagaaacaagattgtagctga 32986242  T
Q  318 ctcattgcgataattaattagccaagaagcctaatagcttattcctaaccgattagaatagaaattcaaattgattagctatcgcaaaaaactaacattt 417  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32986241 ctcattgggataatcaattagccaagaatcctaatagcttattcctaaccggttagaatagaaattcaaattgattagctatcgcaaaaaactaacattt 32986142  T
Q  418 tttaattaactatcatgtgtat 439  Q
    ||||||| ||||||||||||||    
T  32986141 tttaatttactatcatgtgtat 32986120  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 447 - 500
Target Start/End: Complemental strand, 30441367 - 30441314
Alignment:
Q  447 tattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatccta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30441367 tattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaaaccta 30441314  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 501
Target Start/End: Complemental strand, 37720087 - 37720032
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctat 501  Q
    |||||||||||||||||  ||||||||| |||| || |||||||||||||||||||    
T  37720087 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctat 37720032  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 502
Target Start/End: Complemental strand, 9263726 - 9263661
Alignment:
Q  437 tatcttatattattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 502  Q
    |||||||| ||| |||||||||||||  ||||||||| |||| || || |||| ||||||||||||    
T  9263726 tatcttatcttaatatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatg 9263661  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 34703771 - 34703824
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    ||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  34703771 ttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 34703824  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 28549430 - 28549377
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    ||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  28549430 ttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 28549377  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 41866988 - 41867041
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    ||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  41866988 ttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 41867041  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 25867306 - 25867362
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 502  Q
    |||||||||||||||||  ||||||||| |||| || |||||||||||||| |||||    
T  25867306 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaattctatg 25867362  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 479
Target Start/End: Complemental strand, 4328896 - 4328863
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaac 479  Q
    ||||||||||||||||| ||||||||||||||||    
T  4328896 ttattatctaatcctaaagtacaatgcacacaac 4328863  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 35161958 - 35162011
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  35161958 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 35162011  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 502
Target Start/End: Complemental strand, 16961731 - 16961675
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 502  Q
    |||| ||||||||||||  ||||||| | |||| || ||||||||||||||||||||    
T  16961731 ttatcatctaatcctaaactacaatgtaaacaaaacatctaaaaccctaatcctatg 16961675  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 20389918 - 20389974
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 502  Q
    |||||||||||||||||  ||||||||| |||| || ||||||||||||||||||||    
T  20389918 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 20389974  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 33865605 - 33865651
Alignment:
Q  450 tatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatc 497  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  33865605 tatctaatcctaatgtacaatgcacacaagacct-aaaaaccctaatc 33865651  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 499
Target Start/End: Original strand, 34575601 - 34575655
Alignment:
Q  445 attattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    ||||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  34575601 attattatctaatcctaacctacaatgcacacaacatttgcaaaaccctaatcct 34575655  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 13946651 - 13946704
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  13946651 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 13946704  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 4434991 - 4435047
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 502  Q
    |||||||||||||||||  ||||||||| |||| || ||||||||||||||||||||    
T  4434991 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 4435047  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 502
Target Start/End: Complemental strand, 2314551 - 2314484
Alignment:
Q  435 tgtatcttatattattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 502  Q
    |||||||||| |||||||||||||||||  ||||||||| |||| || || |||| ||||||||||||    
T  2314551 tgtatcttatcttattatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatg 2314484  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 11074870 - 11074918
Alignment:
Q  450 tatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  11074870 tatctaatcctaatgtacaatgcacacaagacct-aaaaaccctaatcct 11074918  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 11178362 - 11178418
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 502  Q
    |||||||||||||||||  ||||||||| |||| || || |||||||||||||||||    
T  11178362 ttattatctaatcctaaactacaatgcaaacaaaacatcaaaaaccctaatcctatg 11178418  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 28057050 - 28057106
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 502  Q
    |||||||||||||||||  |||| |||| |||| || ||||||||||||||||||||    
T  28057050 ttattatctaatcctaaactacagtgcaaacaaaacatctaaaaccctaatcctatg 28057106  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 32444469 - 32444532
Alignment:
Q  437 tatcttatattattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatccta 500  Q
    |||||||| |||||||||||||||||  ||||||||| |||| || |  |||||||||||||||    
T  32444469 tatcttatcttattatctaatcctaaactacaatgcaaacaaaacattaaaaaccctaatccta 32444532  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 7536967 - 7537001
Alignment:
Q  437 tatcttatattattatctaatcctaatgtacaatg 471  Q
    |||||||| ||||||||||||||||||||||||||    
T  7536967 tatcttatcttattatctaatcctaatgtacaatg 7537001  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 4091341 - 4091397
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 502  Q
    |||||||||||||||||  ||||||||| |||| || |  |||||||||||||||||    
T  4091341 ttattatctaatcctaaactacaatgcaaacaaaacatgcaaaaccctaatcctatg 4091397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 502
Target Start/End: Complemental strand, 46595848 - 46595792
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 502  Q
    |||||||||||||||||  ||||||||| |||| || ||||||||||||||||||||    
T  46595848 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 46595792  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 30766104 - 30766053
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatc 497  Q
    |||||||||||||||||  ||||||||||||||  | |||||||||||||||    
T  30766104 ttattatctaatcctaaactacaatgcacacaaatcatctaaaaccctaatc 30766053  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 4865124 - 4865177
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  4865124 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 4865177  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 55041578 - 55041525
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  55041578 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 55041525  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 50831244 - 50831196
Alignment:
Q  451 atctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    ||||| |||||||||||||| |||||||||| |  ||||||||||||||    
T  50831244 atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatcct 50831196  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 50844609 - 50844657
Alignment:
Q  451 atctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    ||||| |||||||||||||| |||||||||| |  ||||||||||||||    
T  50844609 atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatcct 50844657  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 1662650 - 1662597
Alignment:
Q  446 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 499  Q
    |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  1662650 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 1662597  T

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