View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_high_9 (Length: 443)
Name: NF11474_high_9
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 191 - 427
Target Start/End: Complemental strand, 54152197 - 54151966
Alignment:
| Q |
191 |
ataatgcacaactaaattcaaagccgttaataatcatcatca---acattattgtaatatgattcatcactagtggtagcctatagataacaaacaagga |
287 |
Q |
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| T |
54152197 |
ataatgcacaactaaattcaaagcggttaatcatcatcatcatcaacattattgtagtatgattcatcactagtggtagcctatagataacaaacaagga |
54152098 |
T |
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| Q |
288 |
aacttgaagatgtaaattttaagtattaattgcacaagttcaatattatttgcataagtttttcactagaatatacattaatcctgaagatgattaatgt |
387 |
Q |
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| T |
54152097 |
aacttgaagatgtaaattttaagta-taattgcacaagttcaatattatttgcataaatttgtcactagaatatacattaatcctgaagatgattaatgt |
54151999 |
T |
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| Q |
388 |
tcaaagattgattgacaagcaattcaaatggtttgataag |
427 |
Q |
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| T |
54151998 |
-------ttgattgacaagcaattcaaatggtttgataag |
54151966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 54153318 - 54153175
Alignment:
| Q |
46 |
ttgagatcagggcgagtatcatacaaatgttctacctaggttttatcagtgcttggaagctaatggaagataaaacagttctatcaaatggcataacatg |
145 |
Q |
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| T |
54153318 |
ttgagatcagggcgagtatcatacaaatgttctacttaggttttatcaatgcttggaagctaatggaagataaaacagttctatcaaatggcataacatg |
54153219 |
T |
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| Q |
146 |
acaccaaactacctatagaaaagttctgaatcctgagtaaaata |
189 |
Q |
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| T |
54153218 |
acaccaaactacctatagagaagttctgaatcctgagtaaaata |
54153175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 70 - 304
Target Start/End: Complemental strand, 54127985 - 54127753
Alignment:
| Q |
70 |
aaatgttctacctaggttttatcagtgcttggaagctaatggaagataaaacagttctatcaaatggcataacatgacaccaaactacctatagaaaagt |
169 |
Q |
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| T |
54127985 |
aaatgttctacttaggttttatcaatgcttggaagctgattgaagacaaagcagttctatcaaatggcataaaatgacaccaaactacctataaaacagt |
54127886 |
T |
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| Q |
170 |
tctgaatcctgagtaaaatacata-atgcacaactaaattcaaagccgttaataatcatcatcaacattattgtaatatgattcatcactagtggtagcc |
268 |
Q |
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| T |
54127885 |
tctaaaacaggagtaaactacatgcattcacaactatattcaaagctgttaatcatcaccattac---tattgtaatacgattcatcactaacggtagcc |
54127789 |
T |
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| Q |
269 |
tatagataacaaacaaggaaacttgaagatgtaaat |
304 |
Q |
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| T |
54127788 |
tatagataacaaacagggaaacttgaagatgtaaat |
54127753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 99 - 427
Target Start/End: Complemental strand, 54141078 - 54140740
Alignment:
| Q |
99 |
tggaagctaatggaagataaaacagttctatcaaatggcataacatgacaccaaactacctatagaaaagttctgaatcctgagtaaaatacat-aatgc |
197 |
Q |
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|||||||||||||||| ||| || |||||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| |||||||| ||||| |
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| T |
54141078 |
tggaagctaatggaaggcaaagcaattctattaaatggcataacatgacaccaaactacctaaaaaacagttcgaaaacatgagtgaaatacatgaatgc |
54140979 |
T |
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| Q |
198 |
acaactaaattcaaagccgttaataatcatcatcaacattattgtaatatgattcatcactagtggtagcctatagataacaaacaaggaaacttgaaga |
297 |
Q |
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| T |
54140978 |
acaactaaattcagagctgt---taatcatcatcatcactactgtcatatgatccatgaatgaccgtagcctatagataacaaacaaggaaacttgaaga |
54140882 |
T |
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| Q |
298 |
tgtaaatttt---------------aagtattaattgcac-aagttcaatattatttgcataagtttttcactagaatatacattaatcctgaagatgat |
381 |
Q |
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| T |
54140881 |
tgtaaatcttagttataactgccagaagtgtaaaatgtactaagttcaatgttatttgcataaatttcttactaaaatatacattaatcttgaagatcat |
54140782 |
T |
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| Q |
382 |
taatgttcaaagattgattgacaagcaattcaaatggtttgataag |
427 |
Q |
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| T |
54140781 |
taatgttcaaa----gattgacaaacaattcaaatggtttgataag |
54140740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 54127711 - 54127642
Alignment:
| Q |
323 |
aagttcaatattatttgcataagtttttcactagaatatacattaatcctgaagatgattaatgttcaaa |
392 |
Q |
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| T |
54127711 |
aagttcaatattatttgcataagtttcttactaacatatacattaatcttgaagatgattcatattcaaa |
54127642 |
T |
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