View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_low_1 (Length: 817)
Name: NF11474_low_1
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 757; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 19 - 808
Target Start/End: Complemental strand, 36942991 - 36942202
Alignment:
| Q |
19 |
cgaacccgcaattcccaactttccagcactttatgtatgtgaaagtggctgctagactctttcgaaccaaaagaaaaatagatacttttaggtttataag |
118 |
Q |
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| T |
36942991 |
cgaacccgcaattcccaactttccagcactttatgtatgtgaaagtggctgctagactctttcgaaccaaaagaaaaatagatacttttaggtttataag |
36942892 |
T |
|
| Q |
119 |
ttgtaactaacaatgaactacaccagaaacgtagaaaaacttcttagaaacgaaaacctgatgtcgtcctgctcttagtgtctaatgatatgcacagact |
218 |
Q |
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| T |
36942891 |
ttgtaactaacaatgaactacaccagaaacgtagaaaaacttcttagaaacgaaaacctgatgtcgtcctgctcttagtgtctaatgatatgcacagact |
36942792 |
T |
|
| Q |
219 |
tcttgcaattgattgagaagacaatgagtgaatgatattaatctataaagcttaagagtaatgttagatagaatacttccatcaacataagcatgctgat |
318 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36942791 |
tcttgcaattgattgaaaagacaatgagtgaatgatattaatctataaagcttaagagtaatgttagatagaatacttccatcgacataagcatgctgat |
36942692 |
T |
|
| Q |
319 |
ttgtgattattgttatatcataatttcaggagctagctaacgcttgctctggaaaatggctgcttctggggtaaacgtcgcggaacttgagctaaaggtt |
418 |
Q |
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| T |
36942691 |
ttgtgattattgttatatcataatttcaggagctagctaacgcttgctctggaaaatggctgcttctggggtaaacgtcgcggaacttgagctaaaggtt |
36942592 |
T |
|
| Q |
419 |
atgtaaatacatgtgttattatgttagtaaagctcatttgcacataatgatggttggttcttttcttatgttaagttcgcttcagtctagcaagcaaatg |
518 |
Q |
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| T |
36942591 |
atgtaaatacatgtgttattatgttagtaaagctcatttgcacataatgatggttggttcttttcttatgttaagttcacttcagtctagcaagcaaatg |
36942492 |
T |
|
| Q |
519 |
aagaggttggaattaaggaagtcacattcttggtggtgggatagtcatatcagtcccaagaattctaagcagcactttgaaaatcttgaaggtaagctag |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942491 |
aagaggttggaattaaggaagtcacattcttggtggtgggatagtcatatcagtcccaagaattctaagcagcactttgaaaatcttgaaggtaagctag |
36942392 |
T |
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| Q |
619 |
ctgccaattataattgcaatgctcttataacttatttatgtttgcctatttatttttgacaagatagttactagatattaaaacaattattggtaaatag |
718 |
Q |
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| T |
36942391 |
ctgccaattataattgcaatgctcttataacttatttatgtttgcctatttatttttgacaagatagttactagatattaaaacaattattggtaaatag |
36942292 |
T |
|
| Q |
719 |
aatgttaattatttttagcacaccaatttaacttgcaannnnnnncatcatctatacaacaaatacaaactcctcctttttcttgatgtc |
808 |
Q |
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| T |
36942291 |
aatgttaattatttttagcacaccaatttaacttgcaatttttttcatcatctatacaacaaatacaaactcctcctttttcttgatgtc |
36942202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 363 - 616
Target Start/End: Complemental strand, 32106207 - 32105960
Alignment:
| Q |
363 |
tgctctggaaaatggctgcttctggggtaaacgtcgcggaacttgagctaaaggttatgtaaatacatgtgttatt-atgttagtaaagctcatttgcac |
461 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||||| || ||| | |||||||| | ||||||||||| ||||| | ||| | |||||||| |
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| T |
32106207 |
tgctctggaaaatggctgcttctggggtaagtgttatggaactttagataa-gtttatgtaattgcatgtgttatttatgttctttaagttaatttgcac |
32106109 |
T |
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| Q |
462 |
ataatgatggttggttcttttcttatgttaagttcgcttcagtctagcaagcaaatgaagaggttggaattaaggaagtcacattcttggtggtgggata |
561 |
Q |
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||||| ||| ||| ||||| ||||| || | || | |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
32106108 |
ataataatgattg------ttcttttgttacattaggttaattctagcaagcaaatgaagaggttggaatcaaggaaatcacattcttggtggtgggata |
32106015 |
T |
|
| Q |
562 |
gtcatatcagtcccaagaattctaagcagcactttgaaaatcttgaaggtaagct |
616 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
32106014 |
gtcatatcagtcccaagaattctaaatggctctttgaaaatcttgaaggttagct |
32105960 |
T |
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