View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_low_10 (Length: 465)
Name: NF11474_low_10
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 51741339 - 51741744
Alignment:
| Q |
1 |
ttttatggttgatttttataacaggtatgtggcttcaggacagattggatatgtggaaaagtttgtgaaagatggaacacaaacagtggaatctttgaaa |
100 |
Q |
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| T |
51741339 |
ttttatggttgatttttataacaggtatgtggcttcaggacagattggatatgtggaaaagtttgtgaaagatggaacacaaacagtggaatctttgaaa |
51741438 |
T |
|
| Q |
101 |
gagattggggacttgtactctttgtttatagtaggaagaggtggtagaggaaatagttcattaacaataggtatgagtgattgggaagaatgtccagaac |
200 |
Q |
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| T |
51741439 |
gagattggggacttgtactctttgtttatagtaggaagaggtggtagaggaaatagttcattaacaataggtatgagtgattgggaagaatgtccagaac |
51741538 |
T |
|
| Q |
201 |
ttggaacggttggtgatgtcttggcttcttcagactttgatattcatggttctgttttggtcattcaacaacatagagatgttaagaagggcataattca |
300 |
Q |
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| T |
51741539 |
ttggaacggttggtgatgtcttggcttcttcagactttgatattcatggttctgttttggtcattcaacaacatagagatgttaagaagggcataattca |
51741638 |
T |
|
| Q |
301 |
tgattaattagtattccaagtacaatagtattatacttcttatatgttgatatagatttatcaacatatagggtgtagataggaaacatttatttgttat |
400 |
Q |
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| T |
51741639 |
tgattaattagtattccaagtacaatagtattatacttcttatatgttgatatagctttatcaacatatagggtgtacataggaaacatttatttgttat |
51741738 |
T |
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| Q |
401 |
tcaacg |
406 |
Q |
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| T |
51741739 |
tcaacg |
51741744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 51741756 - 51741784
Alignment:
| Q |
420 |
aaacaaacaagaaatgctatgtatgtttt |
448 |
Q |
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| T |
51741756 |
aaacaaacaagaaatgctatgtatgtttt |
51741784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 5 - 307
Target Start/End: Original strand, 10202144 - 10202446
Alignment:
| Q |
5 |
atggttgatttttataacaggtatgtggcttcaggacagattggatatgtggaaaagtttgtgaaagatggaacacaaacagtggaatctttgaaagaga |
104 |
Q |
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||||||||||||||||||||| |||| ||||| ||| | ||||||||||| ||||| |||||||| |||||| ||||||||| |||| ||||||||||| |
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| T |
10202144 |
atggttgatttttataacaggcatgtcgcttcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttgaatgtttgaaagaga |
10202243 |
T |
|
| Q |
105 |
ttggggacttgtactctttgtttatagtaggaagaggtggtagaggaaatagttcattaacaataggtatgagtgattgggaagaatgtccagaacttgg |
204 |
Q |
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| T |
10202244 |
ttggtgacatatactctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtccagaacttgg |
10202343 |
T |
|
| Q |
205 |
aacggttggtgatgtcttggcttcttcagactttgatattcatggttctgttttggtcattcaacaacatagagatgttaagaagggcataattcatgat |
304 |
Q |
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| T |
10202344 |
atcagttggtgatattttagcttcttcagattttgatattcatggttctgtgttggtcattcaacaacatagagatgtcaagaaaggtctaatacatgat |
10202443 |
T |
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| Q |
305 |
taa |
307 |
Q |
| |
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||| |
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| T |
10202444 |
taa |
10202446 |
T |
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