View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11474_low_11 (Length: 454)

Name: NF11474_low_11
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11474_low_11
NF11474_low_11
[»] chr3 (2 HSPs)
chr3 (10-437)||(12735510-12735937)
chr3 (178-334)||(32579655-32579811)
[»] scaffold0464 (1 HSPs)
scaffold0464 (65-424)||(7048-7407)
[»] chr7 (8 HSPs)
chr7 (178-334)||(19888504-19888660)
chr7 (178-334)||(19778723-19778879)
chr7 (216-334)||(19351793-19351911)
chr7 (184-310)||(19357055-19357181)
chr7 (183-274)||(19879702-19879793)
chr7 (200-278)||(19721197-19721275)
chr7 (185-281)||(19598578-19598674)
chr7 (230-278)||(19638028-19638076)
[»] chr2 (4 HSPs)
chr2 (133-329)||(18914343-18914536)
chr2 (163-331)||(18909593-18909758)
chr2 (168-332)||(18921488-18921649)
chr2 (238-278)||(20578964-20579004)
[»] chr6 (1 HSPs)
chr6 (178-318)||(14748518-14748657)
[»] chr8 (1 HSPs)
chr8 (237-278)||(42693665-42693706)
[»] chr1 (3 HSPs)
chr1 (214-277)||(43986909-43986972)
chr1 (237-278)||(43907684-43907725)
chr1 (237-277)||(42414164-42414204)


Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Complemental strand, 12735937 - 12735510
Alignment:
Q  10 gcaaaggtttattaggttaggattccacactttcaatttcgatttcagttttcaacaacatcactgctttctttttagttacccaaatacataacatagc 109  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||    
T  12735937 gcaaaggtttattaggttagggttccacactttcaatttcgatttcagttttcaacaacatcactgctttctttttagtgaccaaaatacataacattgc 12735838  T
Q  110 tactatgaattgcccttattcgacaaagtctccgccttcaaactgctgcgctacaacctcgctgatagtccttcttgatgaacttatcgtagaaattctt 209  Q
    |||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12735837 tactatgaattgccttccttcgacaaagtctccgccttcatactgctgcgctacaacctcgctgatagtccttcttgatgaacttatcgtagaaattctt 12735738  T
Q  210 tcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctctcatgatccttccttcgctaaactgcaccttc 309  Q
    |||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12735737 tcacgacttcctgtcaaaactttgatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatctctcatgatccttccttcgctaaactgcaccttc 12735638  T
Q  310 agcgatcgcctcggaacacccaccttttgcttagatcattccgagtaccagacaagggcaactttgattacagtctcatacccattccagtaagtcgttt 409  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||| |||||||||||    
T  12735637 ggcgatcgcctcggaacacccaccttttgctaagatcattccgagtaccagactggggcaactttgattacagtctcatatccattcctgtaagtcgttt 12735538  T
Q  410 gctggagagtccgtccttcatgacacac 437  Q
    ||||||||||||||||||||||||||||    
T  12735537 gctggagagtccgtccttcatgacacac 12735510  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 334
Target Start/End: Complemental strand, 32579811 - 32579655
Alignment:
Q  178 tccttcttgatgaacttatcgtagaaattctttcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctc 277  Q
    |||| ||||||||||| ||||| ||||| || ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||    
T  32579811 tcctccttgatgaactcatcgtggaaatcctatcacgccttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 32579712  T
Q  278 tcatgatccttccttcgctaaactgcaccttcagcgatcgcctcggaacacccacct 334  Q
    | |||||||   |||||| ||| | || ||||| |||||||| ||||||||||||||    
T  32579711 tgatgatcccgtcttcgccaaatttcatcttcatcgatcgccacggaacacccacct 32579655  T

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Target: scaffold0464 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 65 - 424
Target Start/End: Original strand, 7048 - 7407
Alignment:
Q  65 caacatcactgctttctttttagttacccaaatacataacatagctactatgaattgcccttattcgacaaagtctccgccttcaaactgctgcgctaca 164  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  7048 caacatcactgctttctttttagttaccaaaatacataacatagatacaatgaattgccctccttcgacaaagtctccgccatcaaactgctgcgctaca 7147  T
Q  165 acctcgctgatagtccttcttgatgaacttatcgtagaaattctttcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatgga 264  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7148 acgtcgctgatagtccttcttgacgaacttatcgtagaaattctttcacgacttcctgtcaaaactctgatgcaattcaaatgtgtctgcaaatcatgga 7247  T
Q  265 aaaccctaatctctcatgatccttccttcgctaaactgcaccttcagcgatcgcctcggaacacccaccttttgcttagatcattccgagtaccagacaa 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |      
T  7248 aaaccctaatctctcatgatccttccttcgctaaactgcaccttcagcgatcgcctcggaacacccaccttttgctaagattattccgagaaccaggctg 7347  T
Q  365 gggcaactttgattacagtctcatacccattccagtaagtcgtttgctggagagtccgtc 424  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  7348 gggcaactttgattacagtctcatatccattcctgtaagtcgtttgctggagagtccgtc 7407  T

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Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 178 - 334
Target Start/End: Complemental strand, 19888660 - 19888504
Alignment:
Q  178 tccttcttgatgaacttatcgtagaaattctttcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctc 277  Q
    |||| ||||||||||| ||||| || || || |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||    
T  19888660 tcctccttgatgaactcatcgtggatatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 19888561  T
Q  278 tcatgatccttccttcgctaaactgcaccttcagcgatcgcctcggaacacccacct 334  Q
    |||||||||||||||||| ||||| || |||||||| ||||| |||||||| |||||    
T  19888560 tcatgatccttccttcgccaaactccatcttcagcgttcgccgcggaacacacacct 19888504  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 178 - 334
Target Start/End: Original strand, 19778723 - 19778879
Alignment:
Q  178 tccttcttgatgaacttatcgtagaaattctttcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctc 277  Q
    |||| ||||||||||| |||  ||| || || |||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| ||    
T  19778723 tcctccttgatgaactcatcacagacatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcttggaaaaccctaatttc 19778822  T
Q  278 tcatgatccttccttcgctaaactgcaccttcagcgatcgcctcggaacacccacct 334  Q
    |||||||||||||||||| |||||||| |||||||||||||  |||||||| |||||    
T  19778823 tcatgatccttccttcgccaaactgcatcttcagcgatcgcagcggaacacacacct 19778879  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 19351911 - 19351793
Alignment:
Q  216 cttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctctcatgatccttccttcgctaaactgcaccttcagcgat 315  Q
    |||||||| |||||||| ||||||||||||||||| || |||||||||| |||||| || |||||||||||||||||| | ||| |||||||| | || |    
T  19351911 cttcctgtcaaaactcttatgcaattcaaatgtgtttgtaaatcatggacaaccctgatttctcatgatccttccttcaccaaattgcacctttaccggt 19351812  T
Q  316 cgcctcggaacacccacct 334  Q
    |||  ||||||||||||||    
T  19351811 cgcgacggaacacccacct 19351793  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 19357055 - 19357181
Alignment:
Q  184 ttgatgaacttatcgtagaaattctttcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctctcatga 283  Q
    |||||||||| |||   |||||||| || || ||||| || ||||||||||||||||||||||| || |||||||||||||||||||| || ||||||||    
T  19357055 ttgatgaactcatcactgaaattctatcgcggcttcccgtcaaaactctgatgcaattcaaatgcgtttgcaaatcatggaaaacccttatttctcatga 19357154  T
Q  284 tccttccttcgctaaactgcaccttca 310  Q
    | |||||||| | ||| ||||||||||    
T  19357155 ttcttccttcaccaaattgcaccttca 19357181  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 19879793 - 19879702
Alignment:
Q  183 cttgatgaacttatcgtagaaattctttcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaat 274  Q
    ||||||||||| |||  ||| || ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  19879793 cttgatgaactcatcacagacatcctttcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcttggaaaaccctaat 19879702  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 19721197 - 19721275
Alignment:
Q  200 agaaattctttcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctct 278  Q
    |||||| || ||||| |||||| | ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  19721197 agaaatcctatcacgccttcctttcaaaactctgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctct 19721275  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 281
Target Start/End: Complemental strand, 19598674 - 19598578
Alignment:
Q  185 tgatgaacttatcgtagaaattctttcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctctcat 281  Q
    ||||||||||||||| ||||| || |||   |||||||| ||  ||||  ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  19598674 tgatgaacttatcgttgaaatcctatcattccttcctgtaaattctcttgtgcaattcaaatgcgtctgcaagtcatggaaaaccctaatctctcat 19598578  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 19638076 - 19638028
Alignment:
Q  230 tctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctct 278  Q
    ||||||||  ||||||||||||||||| |||||||||||| | ||||||    
T  19638076 tctgatgcgtttcaaatgtgtctgcaagtcatggaaaaccatcatctct 19638028  T

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Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 133 - 329
Target Start/End: Complemental strand, 18914536 - 18914343
Alignment:
Q  133 caaagtctccgccttcaaactgctgcgctacaacctcgctgatagtccttcttgatgaacttatcgtagaaattctttcacgacttcctgtgaaaactct 232  Q
    |||||||||||| |||||||  ||||| | |||| |||||| || ||||||||||||||||||| | |||||| ||||| ||||||||||| ||||||||    
T  18914536 caaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaacttattgcagaaatcctttctcgacttcctgtcaaaactct 18914437  T
Q  233 gatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctctcatgatccttccttcgctaaactgcaccttcagcgatcgcctcggaacacc 329  Q
    ||||||| | ||||| || |||||||||| |||||||||||| ||||   ||||||||||||  ||| |||||||||| ||||| || || ||||||    
T  18914436 gatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctc---atccttccttcgtcaaattgcaccttcatcgatcaccacgaaacacc 18914343  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 331
Target Start/End: Complemental strand, 18909758 - 18909593
Alignment:
Q  163 caacctcgctgatagtccttcttgatgaacttatcgtagaaattctttcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatg 262  Q
    |||| |||||| || |||||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||| | ||||| || ||||||||||     
T  18909758 caacatcgctgttaatccttcttgacgaactcatcgcagaaatcctttcacgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcatt 18909659  T
Q  263 gaaaaccctaatctctcatgatccttccttcgctaaactgcaccttcagcgatcgcctcggaacaccca 331  Q
    |||||||||||| ||||   |||||| |||||| ||| |||||||||| ||||| || |||||||||||    
T  18909658 gaaaaccctaatttctc---atcctttcttcgccaaattgcaccttcaccgatcaccacggaacaccca 18909593  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 168 - 332
Target Start/End: Complemental strand, 18921649 - 18921488
Alignment:
Q  168 tcgctgatagtccttcttgatgaacttatcgtagaaattctttcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaa 267  Q
    |||||| || ||||||||||||| || |||| |||||| |||||||| ||||| || ||||||||||||||| | ||||| || |||||||||| |||||    
T  18921649 tcgctgttaatccttcttgatgagctcatcgcagaaatcctttcacgtcttccagtaaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaa 18921550  T
Q  268 ccctaatctctcatgatccttccttcgctaaactgcaccttcagcgatcgcctcggaacacccac 332  Q
    ||||||| ||||   ||||||||||||  ||| |||||||||| |||||||| ||||||||||||    
T  18921549 ccctaatttctc---atccttccttcgtcaaaatgcaccttcatcgatcgccgcggaacacccac 18921488  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 20579004 - 20578964
Alignment:
Q  238 aattcaaatgtgtctgcaaatcatggaaaaccctaatctct 278  Q
    |||| ||| |||| |||||||||||||||||||||||||||    
T  20579004 aattgaaacgtgtttgcaaatcatggaaaaccctaatctct 20578964  T

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Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 178 - 318
Target Start/End: Original strand, 14748518 - 14748657
Alignment:
Q  178 tccttcttgatgaacttatcgtagaaattctt-tcacgacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatct 276  Q
    |||| ||||||||||||||||| | ||||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |    
T  14748518 tcctccttgatgaacttatcgt-ggaattcttgtcacgactccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaattt 14748616  T
Q  277 ctcatgatccttccttcgctaaactgcaccttcagcgatcgc 318  Q
    |||||||||||||||| || ||| |||| |||||||||||||    
T  14748617 ctcatgatccttcctttgccaaa-tgcatcttcagcgatcgc 14748657  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 42693665 - 42693706
Alignment:
Q  237 caattcaaatgtgtctgcaaatcatggaaaaccctaatctct 278  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  42693665 caattcaaatgtgtctgcaaatcatggaaaactctaatctct 42693706  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 43986972 - 43986909
Alignment:
Q  214 gacttcctgtgaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctc 277  Q
    ||||||| |||||| | ||| | |||||||||||  | ||||||||||||||||||||||||||    
T  43986972 gacttccggtgaaatccctgcttcaattcaaatgcatttgcaaatcatggaaaaccctaatctc 43986909  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 43907684 - 43907725
Alignment:
Q  237 caattcaaatgtgtctgcaaatcatggaaaaccctaatctct 278  Q
    |||| ||| ||||| |||||||||||||||||||||||||||    
T  43907684 caatacaagtgtgtttgcaaatcatggaaaaccctaatctct 43907725  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 42414164 - 42414204
Alignment:
Q  237 caattcaaatgtgtctgcaaatcatggaaaaccctaatctc 277  Q
    |||||||  ||||| ||||||||||||||||||||||||||    
T  42414164 caattcaggtgtgtatgcaaatcatggaaaaccctaatctc 42414204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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