View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_low_16 (Length: 384)
Name: NF11474_low_16
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 31718045 - 31717675
Alignment:
| Q |
1 |
atttagattaatgatacctactacaatatatttgaagattcaagttggaaaagaagcaaaagcttgaca----gaattatatttctttccctttctgtcg |
96 |
Q |
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| T |
31718045 |
atttagattaatgatacctactacaatatatttgaatattcaagttggaaaagaagcaaaagcttgacataattaattatatttctttccctttctgtcg |
31717946 |
T |
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| Q |
97 |
cacaaagcaacaaaccaaaattcttgtctcatctgatgccttatctttatccttcactgcgacccggagcaaagccagctccggatcactcaaatgggat |
196 |
Q |
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| T |
31717945 |
cacaaagcaacaaaccaaaatccttgtctcatctgatgccttatctttatccttcactgcgatccggagcaaagcgagctccggatcactcaaacgggat |
31717846 |
T |
|
| Q |
197 |
ttgaacacttcgtcccaaataggataccagttgtccgtctctactcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31717845 |
ttgaacacttcgtcccaaataggataccagttgtccgtctctactcttgttttcttcttaacacaatcagctcccactccaacaatacaaatctgtcacg |
31717746 |
T |
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| Q |
297 |
cagttttatataatataatcaaactataagataaatgtacatgatcagccaaacgaatttagaaaatgatg |
367 |
Q |
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| T |
31717745 |
cagttttatataatataatcaaactataagataaatgtacatgatcagccaaacgaatttagaaaatgatg |
31717675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 128 - 294
Target Start/End: Complemental strand, 31654334 - 31654168
Alignment:
| Q |
128 |
tctgatgccttatctttatccttcactgcgacccggagcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagt |
227 |
Q |
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| T |
31654334 |
tctgatcccttatctttatctttcacttcgatccggagcaatgcaagctctggaacagtcaattggaattcgaactcttcgtcccaaacaggataccaat |
31654235 |
T |
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| Q |
228 |
tgtccgtctctactcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtca |
294 |
Q |
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| T |
31654234 |
tgtccatctttacacttgttttcatcttcacactatcagctcccactccagcaatacaaacctgtca |
31654168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 31654479 - 31654383
Alignment:
| Q |
21 |
ctacaatatatttgaagattcaagttggaaaagaagcaaaagcttgacagaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaat |
117 |
Q |
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| T |
31654479 |
ctacaatatatttaaagtttcaaggtggaatccaagtaaaagcttgacagagttatatttctttccctttctgtcacacaaagcaacagaccgaaat |
31654383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 308
Target Start/End: Complemental strand, 31704691 - 31704522
Alignment:
| Q |
139 |
atctttatccttcactgcgacccggagcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagttgtccgtctct |
238 |
Q |
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|||||||||||| ||| ||| ||||||||| || ||||||||| | ||||| || | | ||| ||||||||||||| |||| ||| |||||| ||| | |
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| T |
31704691 |
atctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaattgtccatcttt |
31704592 |
T |
|
| Q |
239 |
actcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatata |
308 |
Q |
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| T |
31704591 |
acacttgttttcttcttggcacaatcagctctcactccagcaatagaaacctgtcacatagttttgtata |
31704522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 31704810 - 31704751
Alignment:
| Q |
58 |
aaaagcttgacagaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaat |
117 |
Q |
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| T |
31704810 |
aaaagcttgacagagttatatttctttccctttctgtcacacaaagcaacagaccgaaat |
31704751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 364
Target Start/End: Original strand, 44901426 - 44901547
Alignment:
| Q |
242 |
cttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatataatataatcaaactataagat-aaatgtacatga |
340 |
Q |
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|||||||||||||| |||| ||||||||||||| ||||||||||| ||||||| || ||||||| ||| | ||||||||||||||| ||||||||| || |
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| T |
44901426 |
cttgttttcttctt--cacagtcagctcccactccaacaatacaaacctgtcacacaattttatacaatttgatcaaactataagataaaatgtacagga |
44901523 |
T |
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| Q |
341 |
tcagccaaacgaatttagaaaatg |
364 |
Q |
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||||||||| |||||||||||| |
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| T |
44901524 |
tcagccaaatagatttagaaaatg |
44901547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 44901188 - 44901284
Alignment:
| Q |
21 |
ctacaatatatttgaagattcaagttggaaaagaagcaaaagcttgacagaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaat |
117 |
Q |
| |
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|||||||||||||| || ||||| || || |||| |||||||| ||||| ||| ||||||| ||||||| ||| |||||| |||||||| |||| |
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| T |
44901188 |
ctacaatatatttgtagtttcaacgtgaaagcgaagtaaaagcttaacagagttaaatttcttcccctttcagtcacacaaacgaacaaaccgaaat |
44901284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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