View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_low_19 (Length: 333)
Name: NF11474_low_19
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 26355625 - 26355931
Alignment:
| Q |
20 |
catggctatgacactgttctgcaaaaagcttgaatctttactaagaaactgtgaaacaaaatggtttgaagctagtattttgtaagaaaaatggttgctt |
119 |
Q |
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| T |
26355625 |
catggctatgacactgttctgcaaaaagcttgaatctttactaagaaactgtgaaacaaaatggtttgaag---gtattttgtaagaaaaatggttgctt |
26355721 |
T |
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| Q |
120 |
agtgaaatggcaccttgtttggcacaaagaatgtagtacaacaacaccagagcatccttgcatatgaagggagaatggtaagtcaaacacccaaattacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26355722 |
agtgaaatggcaccttgtttggcacaaagaatgtagtacagcaacaccagagcatccttgcatatgaagggagaatggtaagtcaaacacccaaattacc |
26355821 |
T |
|
| Q |
220 |
ctttttcttgttgtaatgcgaaaatcccaaaccaaataagtggtcattttaaattatgttgaagggcattgttgtattttgcagcttggtatttctctcc |
319 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
26355822 |
ctttttttggttgtaatgcgaaaatcccaaaccaaataagtggtcattttaaattatgttgaagggcattgttgtatttggcagcttggtatttctgtcc |
26355921 |
T |
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| Q |
320 |
tttgcttctc |
329 |
Q |
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||| |||||| |
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| T |
26355922 |
tttacttctc |
26355931 |
T |
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