View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11474_low_2 (Length: 614)

Name: NF11474_low_2
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11474_low_2
NF11474_low_2
[»] chr5 (6 HSPs)
chr5 (18-563)||(41106105-41106650)
chr5 (379-437)||(3771226-3771284)
chr5 (379-429)||(3907714-3907764)
chr5 (515-563)||(43281125-43281174)
chr5 (517-563)||(15400866-15400913)
chr5 (515-560)||(41377814-41377860)
[»] chr3 (4 HSPs)
chr3 (21-226)||(21865819-21866024)
chr3 (373-436)||(11532489-11532552)
chr3 (379-436)||(36480767-36480824)
chr3 (379-436)||(31205391-31205448)
[»] chr7 (10 HSPs)
chr7 (379-442)||(40134446-40134509)
chr7 (304-365)||(33651534-33651595)
chr7 (516-563)||(23636744-23636792)
chr7 (379-436)||(26862973-26863030)
chr7 (383-435)||(47497764-47497816)
chr7 (379-429)||(12275798-12275848)
chr7 (379-436)||(7017146-7017203)
chr7 (379-436)||(7032504-7032561)
chr7 (379-435)||(2276337-2276393)
chr7 (350-435)||(24516579-24516666)
[»] chr8 (7 HSPs)
chr8 (379-429)||(40175954-40176004)
chr8 (350-429)||(26018491-26018570)
chr8 (379-435)||(13260415-13260471)
chr8 (379-429)||(34504437-34504487)
chr8 (379-436)||(2288621-2288678)
chr8 (380-436)||(13772455-13772510)
chr8 (381-433)||(40694675-40694727)
[»] chr4 (6 HSPs)
chr4 (379-436)||(2324780-2324837)
chr4 (380-435)||(3688593-3688648)
chr4 (384-442)||(993233-993291)
chr4 (379-436)||(15134589-15134646)
chr4 (379-436)||(16457942-16457999)
chr4 (376-429)||(51192543-51192596)
[»] chr2 (10 HSPs)
chr2 (383-435)||(44247561-44247613)
chr2 (379-429)||(1930699-1930749)
chr2 (379-437)||(42094263-42094320)
chr2 (379-436)||(16209397-16209454)
chr2 (379-456)||(18719731-18719810)
chr2 (379-434)||(37810206-37810261)
chr2 (379-433)||(1469799-1469853)
chr2 (382-436)||(3466450-3466504)
chr2 (381-456)||(45300429-45300506)
chr2 (376-429)||(33069224-33069277)
[»] chr6 (5 HSPs)
chr6 (384-435)||(1473638-1473689)
chr6 (379-429)||(11650918-11650968)
chr6 (379-435)||(6643375-6643431)
chr6 (379-433)||(26328221-26328275)
chr6 (384-433)||(28865435-28865484)
[»] chr1 (7 HSPs)
chr1 (363-434)||(23317933-23318004)
chr1 (379-433)||(731390-731444)
chr1 (379-436)||(2542762-2542819)
chr1 (380-436)||(34437620-34437676)
chr1 (379-452)||(18075172-18075243)
chr1 (379-436)||(40668951-40669008)
chr1 (379-435)||(45925168-45925224)


Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Original strand, 41106105 - 41106650
Alignment:
Q  18 gtaatgtcctttcctccagtaatattatacactaccccagtggctgattgaatagatgatccaattaaaggagccaaagtagcctgttcggctgcttctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41106105 gtaatgtcctttcctccagtaatattatacactaccccagtggctgattgaatagatgatccaattaaaggagccaaagtagcctgttcggctgcttctt 41106204  T
Q  118 cggctcggtttttaccggaggaaacacctactccgagcattgcagtaccagagtctttcatcacagcttttacatcagcaaaatccacattcacaagtcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41106205 cggctcggtttttaccggaggaaacacctactccgagcattgcagtaccagagtctttcatcacagcttttacatcagcaaaatccacattcacaagtcc 41106304  T
Q  218 aggtatctgaaagaacacaacaaccagggttgtcaaaatcgaccagtttaccccattagaataatatatgcatgacatgaggaattctagcatcacactc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41106305 aggtatctgaaagaacacaacaaccagggttgtcaaaatcgaccagtttaccccattagaataatatatgcatgacatgaggaattatagcatcacactc 41106404  T
Q  318 tctaacacacacatcccaacacactttttcctattgattaaaattcatgagttcaactaagtttatatgggacccacataatttggtgcaaccgatgtga 417  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41106405 tctaacaaacacatcccaacacacttgttcctattgattaaaattcatgagttcaactaagtttatatgggacccacataatttggtgcgaccgatgtga 41106504  T
Q  418 attttaaccaataaaagagtctgttcaagagtgtgttagcattgtagtcgggatcgagtgctggtctgtaggattgaaagatcctatcctaccgtcacac 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41106505 attttaaccaataaaagagtctgttcaagagtgtgttagcattgtaatcgggatcgagtgctggtctgtaggattgaaagatcctatcctaccgtcacac 41106604  T
Q  518 ggcacctcaatcgtcttcgactttactcaggtttgtttttgctctg 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41106605 ggcacctcaatcgtcttcgactttactcaggtttgtttttgctctg 41106650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Original strand, 3771226 - 3771284
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagagt 437  Q
    |||||||||| ||| ||| |||||||| |||| |||||||||||||||||| |||||||    
T  3771226 tttatatgggtcccgcatgatttggtggaaccaatgtgaattttaaccaatcaaagagt 3771284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 3907714 - 3907764
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat 429  Q
    |||||||||||||||||| ||||||||  ||| ||||||||||||||||||    
T  3907714 tttatatgggacccacatgatttggtgggacccatgtgaattttaaccaat 3907764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 43281174 - 43281125
Alignment:
Q  515 cacggcacctcaatcgt-cttcgactttactcaggtttgtttttgctctg 563  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  43281174 cacggcacctcaatcatgcttcgactttactcaggttcgtttttgctctg 43281125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 563
Target Start/End: Complemental strand, 15400913 - 15400866
Alignment:
Q  517 cggcacctcaatcgt-cttcgactttactcaggtttgtttttgctctg 563  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  15400913 cggcacctcaatcgtacttcgactttactcaggtttgttattgttctg 15400866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 560
Target Start/End: Complemental strand, 41377860 - 41377814
Alignment:
Q  515 cacggcacctcaatcgt-cttcgactttactcaggtttgtttttgct 560  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  41377860 cacggcacctcaatcgtgcttcgactttactcaggttcgtttctgct 41377814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 8e-72; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 21865819 - 21866024
Alignment:
Q  21 atgtcctttcctccagtaatattatacactaccccagtggctgattgaatagatgatccaattaaaggagccaaagtagcctgttcggctgcttcttcgg 120  Q
    ||||| |||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||| |||| |||||| ||||| || |||||||| |    
T  21865819 atgtcttttcctccagtaatattatatactatcccagtagctgactgaatagatgatccaattaaaggtgccagagtagcttgttctgcagcttcttctg 21865918  T
Q  121 ctcggtttttaccggaggaaacacctactccgagcattgcagtaccagagtctttcatcacagcttttacatcagcaaaatccacattcacaagtccagg 220  Q
    | ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  21865919 cacggtttttaccagaggaaacacctactccaagcattgcagttccagagtctttcatcacagcttttacatcagcaaaatccacatttacaagaccagg 21866018  T
Q  221 tatctg 226  Q
    ||||||    
T  21866019 tatctg 21866024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 436
Target Start/End: Original strand, 11532489 - 11532552
Alignment:
Q  373 actaagtttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    ||||| ||||||||||| |||||| |||||||| |||| |||||||||||||||||| ||||||    
T  11532489 actaaatttatatgggatccacatgatttggtggaacccatgtgaattttaaccaatcaaagag 11532552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 436
Target Start/End: Original strand, 36480767 - 36480824
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    |||||||||||||||||| ||||||||  ||| |||||||||||| ||||| ||||||    
T  36480767 tttatatgggacccacatgatttggtgggacccatgtgaattttagccaatcaaagag 36480824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 31205448 - 31205391
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    |||||||||||||||||| |||||||   ||| |||| ||||||||||||| ||||||    
T  31205448 tttatatgggacccacatgatttggtaagacccatgtaaattttaaccaatcaaagag 31205391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 40134446 - 40134509
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagagtctgtt 442  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||||| | ||||| ||||    
T  40134446 tttatatgggacccacataatttggtgggacccatgtgaattttaaccaatcagagagtgtgtt 40134509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 33651595 - 33651534
Alignment:
Q  304 ctagcatcacactctctaacacacacatcccaacacactttttcctattgattaaaattcat 365  Q
    |||||||||||||||| ||||||||||| |||||||||| | | |||||| |||||||||||    
T  33651595 ctagcatcacactctcaaacacacacataccaacacactctcttctattggttaaaattcat 33651534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 516 - 563
Target Start/End: Original strand, 23636744 - 23636792
Alignment:
Q  516 acggcacctcaatcgt-cttcgactttactcaggtttgtttttgctctg 563  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  23636744 acggcacctcaatcgtgcttcgactttacccaggtttgtttttgctctg 23636792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 436
Target Start/End: Original strand, 26862973 - 26863030
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    ||||||| |||||||||| ||||||||  ||| |||||||||||||||||| ||||||    
T  26862973 tttatataggacccacatgatttggtgggacccatgtgaattttaaccaattaaagag 26863030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 47497764 - 47497816
Alignment:
Q  383 tatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaaga 435  Q
    |||||||||||||||||||||||  ||  |||||||||||||||||| |||||    
T  47497764 tatgggacccacataatttggtgggactcatgtgaattttaaccaatcaaaga 47497816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 12275798 - 12275848
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat 429  Q
    |||||||||||||||||| ||||||||  ||| || |||||||||||||||    
T  12275798 tttatatgggacccacatgatttggtgggacccatatgaattttaaccaat 12275848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Original strand, 7017146 - 7017203
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    ||||||||||| ||||||||||||||   ||  |||||||||||||||||| ||||||    
T  7017146 tttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaagag 7017203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Original strand, 7032504 - 7032561
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    ||||||||||| ||||||||||||||   ||  |||||||||||||||||| ||||||    
T  7032504 tttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaagag 7032561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 2276337 - 2276393
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaaga 435  Q
    |||||| ||||||||||||||||||||  |   |||||||||||||||||| |||||    
T  2276337 tttataagggacccacataatttggtgggattcatgtgaattttaaccaattaaaga 2276393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 435
Target Start/End: Complemental strand, 24516666 - 24516579
Alignment:
Q  350 attgattaaaattca--tgagttcaactaagtttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaaga 435  Q
    |||||||||||||||  || | || ||||| |||| |||| | |||||| ||||||||  ||| |||||||||||||||||| |||||    
T  24516666 attgattaaaattcacatgggatccactaaatttagatggaatccacatgatttggtgggacccatgtgaattttaaccaatcaaaga 24516579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 40175954 - 40176004
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat 429  Q
    |||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  40175954 tttatatgggacccacataatttggtgggacccatgtgaattttaaccaat 40176004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 26018491 - 26018570
Alignment:
Q  350 attgattaaaattcatgagttcaactaagtttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat 429  Q
    |||| |||||||||| |||  | || || |||||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  26018491 attggttaaaattcacgagacccaccaaatttatatgggacccacataatttgatgggacccatgtgaattttaaccaat 26018570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 13260471 - 13260415
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaaga 435  Q
    |||||||||||||||||| | ||||||  ||| ||||| ||||||||||||||||||    
T  13260471 tttatatgggacccacatgagttggtgggacccatgtgcattttaaccaataaaaga 13260415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 34504437 - 34504487
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat 429  Q
    |||||||||||||||||| ||||||||  ||| ||| ||||||||||||||    
T  34504437 tttatatgggacccacatgatttggtgtgacccatgcgaattttaaccaat 34504487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 2288678 - 2288621
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    |||||||||||||||  | |||||||| |||| |||| ||||||||||||| ||||||    
T  2288678 tttatatgggacccatgtgatttggtgaaacccatgtaaattttaaccaatcaaagag 2288621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 436
Target Start/End: Original strand, 13772455 - 13772510
Alignment:
Q  380 ttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    |||||||||||||| ||||||||||| || || |||||||||||| |||| ||||||    
T  13772455 ttatatgggacccatataatttggtggaatcg-tgtgaattttaatcaatcaaagag 13772510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 40694675 - 40694727
Alignment:
Q  381 tatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaa 433  Q
    ||||| |||||||||| ||||||||  ||| |||||||||||||| |||||||    
T  40694675 tatataggacccacatgatttggtgggacccatgtgaattttaactaataaaa 40694727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 2324837 - 2324780
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    |||||||||||||||||| |||||||| |||  |||||||||||||||||| ||||||    
T  2324837 tttatatgggacccacatgatttggtgaaactcatgtgaattttaaccaatcaaagag 2324780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 435
Target Start/End: Complemental strand, 3688648 - 3688593
Alignment:
Q  380 ttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaaga 435  Q
    ||||||||||||||||| ||||||||  ||| |||||||||||||| ||| |||||    
T  3688648 ttatatgggacccacatgatttggtgagacccatgtgaattttaactaatcaaaga 3688593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 993291 - 993233
Alignment:
Q  384 atgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagagtctgtt 442  Q
    ||||||||||||| ||||||||  ||  |||||||||||||||||| ||||||| ||||    
T  993291 atgggacccacatgatttggtgggactcatgtgaattttaaccaatcaaagagtgtgtt 993233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 15134646 - 15134589
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    ||||||||||||||| || |||| ||   ||| |||||||||||||||||||||||||    
T  15134646 tttatatgggacccaaatgatttagtcggacccatgtgaattttaaccaataaaagag 15134589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 16457999 - 16457942
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    |||||||||||||||||| ||||| ||  | | |||||||||||||||||| ||||||    
T  16457999 tttatatgggacccacatgatttgatgggatccatgtgaattttaaccaatcaaagag 16457942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 51192596 - 51192543
Alignment:
Q  376 aagtttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat 429  Q
    ||||||| ||||| |||||||||||||||| |||| | ||||| ||||||||||    
T  51192596 aagtttaaatgggtcccacataatttggtggaacccaagtgaaatttaaccaat 51192543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 44247613 - 44247561
Alignment:
Q  383 tatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaaga 435  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||| |||||    
T  44247613 tatgggacccacataatttggtggaacccatgtgaatttcaaccaatcaaaga 44247561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 1930749 - 1930699
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat 429  Q
    |||||||||||||||||||||||| || |||  ||||||||||||||||||    
T  1930749 tttatatgggacccacataatttgatggaacatatgtgaattttaaccaat 1930699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Original strand, 42094263 - 42094320
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagagt 437  Q
    |||||||||||||||||| ||||||||  ||| |||||||||||||||||| |||||||    
T  42094263 tttatatgggacccacatgatttggtgggacc-atgtgaattttaaccaatcaaagagt 42094320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 16209454 - 16209397
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    ||||||||||||| ||| ||||||||| |||  |||||||||||||||||| ||||||    
T  16209454 tttatatgggaccgacaaaatttggtggaactcatgtgaattttaaccaattaaagag 16209397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 456
Target Start/End: Complemental strand, 18719810 - 18719731
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat--aaaagagtctgttcaagagtgtgttag 456  Q
    |||||||||||||||||| |||||||| |||   |||||||||||||||||  |||||||| |||| || | ||||||||    
T  18719810 tttatatgggacccacatgatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgttag 18719731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 37810206 - 37810261
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaag 434  Q
    |||||||||||||||  ||||||||||  ||| |||||||||||||||||| ||||    
T  37810206 tttatatgggacccatctaatttggtgggacccatgtgaattttaaccaatcaaag 37810261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 1469799 - 1469853
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaa 433  Q
    |||||||||||||||||| |||| |||  | | ||||||||||||||||||||||    
T  1469799 tttatatgggacccacatgattttgtgggatccatgtgaattttaaccaataaaa 1469853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 3466450 - 3466504
Alignment:
Q  382 atatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    ||||||||||||||  |||| ||| |||| |||||||||||||||||| ||||||    
T  3466450 atatgggacccacacgatttagtggaacccatgtgaattttaaccaatcaaagag 3466504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 456
Target Start/End: Original strand, 45300429 - 45300506
Alignment:
Q  381 tatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat--aaaagagtctgttcaagagtgtgttag 456  Q
    ||||||||||||| |||||||| || || | ||||||||||||||||||  |||||||| | || || ||||||||||    
T  45300429 tatatgggacccatataatttgatggaatccatgtgaattttaaccaatcaaaaagagtgtattgaaaagtgtgttag 45300506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 33069224 - 33069277
Alignment:
Q  376 aagtttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat 429  Q
    |||||||||||||||||||||||||| |||  ||| | |||| |||||||||||    
T  33069224 aagtttatatgggacccacataatttagtgggacccaagtgatttttaaccaat 33069277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 1473689 - 1473638
Alignment:
Q  384 atgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaaga 435  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||| |||||    
T  1473689 atgggacccacatgatttggtggaacccatgtgaattttaaccaatcaaaga 1473638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 11650968 - 11650918
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaat 429  Q
    |||||||||||||||||||||||||||  | | ||||||||||||||||||    
T  11650968 tttatatgggacccacataatttggtgggatccatgtgaattttaaccaat 11650918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 6643375 - 6643431
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaaga 435  Q
    |||||||||||||||||| ||||||||  ||| || ||||||||||||||| |||||    
T  6643375 tttatatgggacccacatgatttggtgggacctatatgaattttaaccaatcaaaga 6643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 26328221 - 26328275
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaa 433  Q
    |||||||||||||||||| ||| |||| |||| |||||||||| || ||||||||    
T  26328221 tttatatgggacccacatgattcggtggaacccatgtgaatttcaatcaataaaa 26328275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 28865484 - 28865435
Alignment:
Q  384 atgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaa 433  Q
    ||||||||||||| | ||||||  ||| ||||||||||||||||||||||    
T  28865484 atgggacccacatgaattggtgggacccatgtgaattttaaccaataaaa 28865435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 23318004 - 23317933
Alignment:
Q  363 catgagttcaactaagtttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaag 434  Q
    |||||| || ||||| |||||||||||||||||| ||||||||  ||| |||||||||||||| ||| ||||    
T  23318004 catgagatccactaaatttatatgggacccacatgatttggtgggacctatgtgaattttaacaaattaaag 23317933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 731390 - 731444
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaa 433  Q
    |||||||||||||||||| ||||||||| ||  |||| |||||||||||||||||    
T  731390 tttatatgggacccacatgatttggtgcgactcatgtaaattttaaccaataaaa 731444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 436
Target Start/End: Original strand, 2542762 - 2542819
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    ||||||||| |||||||| |||||||| || | |||||||||||||||||| ||||||    
T  2542762 tttatatggaacccacatgatttggtggaagccatgtgaattttaaccaatcaaagag 2542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 436
Target Start/End: Complemental strand, 34437676 - 34437620
Alignment:
Q  380 ttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    ||||||||| ||||||| ||||||||  ||| |||||||||||||||||| ||||||    
T  34437676 ttatatgggtcccacatgatttggtgggacccatgtgaattttaaccaatcaaagag 34437620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 452
Target Start/End: Complemental strand, 18075243 - 18075172
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagagtctgttcaagagtgtg 452  Q
    |||||||||||||||||| ||||||||  |||   |||| ||||||||||||||||||| ||||  ||||||||    
T  18075243 tttatatgggacccacatgatttggtgttacca--gtgagttttaaccaataaaagagtgtgttagagagtgtg 18075172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 40669008 - 40668951
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaagag 436  Q
    |||||||||| |||||||||||| |||  ||| |||||| ||||||||||| ||||||    
T  40669008 tttatatgggtcccacataattttgtgagacccatgtgagttttaaccaatcaaagag 40668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 45925168 - 45925224
Alignment:
Q  379 tttatatgggacccacataatttggtgcaaccgatgtgaattttaaccaataaaaga 435  Q
    |||||||||||||||||||||||||||  ||  || |||||||||| |||| |||||    
T  45925168 tttatatgggacccacataatttggtgagactcatatgaattttaatcaatcaaaga 45925224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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