View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_low_24 (Length: 283)
Name: NF11474_low_24
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 40004822 - 40005078
Alignment:
| Q |
5 |
actctcaatctctcaggcagttccccctttgattt------tcccacacatgtaacaatccacaatctactatcaatttatccaacaaagaagccagaag |
98 |
Q |
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| T |
40004822 |
actctcaatctctcaggcagttccccctttgatttcccagttcccacacatgtaacgatccacaatctactatcaatttatccaacaaagaagccagaag |
40004921 |
T |
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| Q |
99 |
acaatagttcaaacggttacattcaaaatttannnnnnnnnnnnnngatccaaactagaaatacggatccttaattaggataagttgctagaattagaaa |
198 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
40004922 |
acaatagttcaacgggttacattcaaaatttatttttttattttttgatccaaactagaaatacggatcc----ttaggataagttgc------tagaaa |
40005011 |
T |
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| Q |
199 |
ccttgatgttttaaaaaatccatgtttacaatatttacatttcttttcctatgtgacatgcatagag |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40005012 |
ccttgatgttttaaaaaatccatgtttacaatatttacatttcttttcctatgtgacatgcatagag |
40005078 |
T |
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