View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_low_27 (Length: 267)
Name: NF11474_low_27
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 6757737 - 6757500
Alignment:
| Q |
13 |
gagatattgattaataaatgtaagttaccctcggatgagatcatgagtatttgtgtcattcatcaccctccaagtaaaataaagtgttactatatatttc |
112 |
Q |
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| T |
6757737 |
gagatattgattaataaatgtaagttaccctcggatgagatcatgagtatttgtgtcattcatcaccctccaagtaaaataaagtgttactatatatttc |
6757638 |
T |
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| Q |
113 |
aaaataagctataacaataattctagttttgaaagataaacactcagactaatgcattcaatgaatcattttcatccaatcgagtccaacatttgaaacc |
212 |
Q |
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| T |
6757637 |
aaaataagctataacaataattccagttttgaaagataaacgct-agactaatgcattcaatgaatcattttcatctaatcgagtccaacatttgaaacc |
6757539 |
T |
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| Q |
213 |
attgaggttaccagtaacagaatagaaaatggatacaac |
251 |
Q |
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| T |
6757538 |
attgaggttaccagtaacagaatagaaaatggatacaac |
6757500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 25465401 - 25465471
Alignment:
| Q |
141 |
ttgaaagataaacactcagactaatgcattcaatgaat-cattttcatccaatcgagtccaacatttgaaa |
210 |
Q |
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| T |
25465401 |
ttgaaagattaacactcagtctgatgcattcaatgaatcctttttcatttaatcaagtccaacatttgaaa |
25465471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 46957080 - 46957044
Alignment:
| Q |
140 |
tttgaaagataaacactcagactaatgcattcaatga |
176 |
Q |
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| T |
46957080 |
tttgaaacataaacactcagtctaatgcattcaatga |
46957044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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