View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_low_3 (Length: 537)
Name: NF11474_low_3
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 3297984 - 3298516
Alignment:
| Q |
1 |
tgataaaagattttgaaaatattgttcatgagagtgaacaatttgtaaaaagtatataaaagctagtgagtaaaaaagttcaaagaggcaatgttgatgg |
100 |
Q |
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| T |
3297984 |
tgataaaagattttgaaaatattgttcatgagagtgagcaatttgtaaaaagtatataaaagctagtgagtaaaa--gttcaaagaggcaatgttgatgg |
3298081 |
T |
|
| Q |
101 |
ttcttccttacatgcctgtctttggaatcacattcacatagttcctataaaagtgtctttgcatgcattaaagctttcaaataatagattacatatagct |
200 |
Q |
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| T |
3298082 |
ttcttccttacatgcctgtctttggaatcacattcacatagttcctataaaagtgtctttgcatgcattaaagctttcaaataatagattacatatagct |
3298181 |
T |
|
| Q |
201 |
tg-------------tgatgaaactctgcaacatttannnnnnnagtgttcatcttttgctcaaatgcggcaagggatttttaattggttaaacatccaa |
287 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3298182 |
tggtttgtagaggtgtgatgaaactctgcaacatttatttttttagtgttcatcttttgctcaaatgcggcaagggatttttaattggttagacatccaa |
3298281 |
T |
|
| Q |
288 |
agtgtggtacaaatactctagtcatatatatagacaatttttagtcaacaaattagtgcaaacattaacatacaaccccaaaagtttggttccatggtga |
387 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3298282 |
agtgtgatacaaatattctagtcatatatatagacaatttttagtcaacaaattagtgcaaacattaacatacaaccccaagagtttggttccatggtga |
3298381 |
T |
|
| Q |
388 |
aaagatatatcttaaatatgtatgctttgtcttcaaacttcgctactgtccttaaacagatttaaatgtcaatacttttttacgcaaaaatttaaatact |
487 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3298382 |
aaagatatatcttgaatatgtatgctttgtcttcaaacttcgctactgtccttaaacagatttaaatgtcaatacttttttacgcaaaaatttaaatact |
3298481 |
T |
|
| Q |
488 |
tttataagtatttttcgagtgtttaagtctcttct |
522 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3298482 |
tttataagtatttttcgagtgtttaagtctcttct |
3298516 |
T |
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