View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11474_low_30 (Length: 251)

Name: NF11474_low_30
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11474_low_30
NF11474_low_30
[»] chr3 (1 HSPs)
chr3 (2-251)||(51763833-51764082)
[»] chr4 (4 HSPs)
chr4 (59-250)||(21833772-21833963)
chr4 (139-251)||(53761250-53761362)
chr4 (62-170)||(3438118-3438226)
chr4 (93-212)||(1755035-1755154)
[»] chr1 (3 HSPs)
chr1 (11-249)||(19467894-19468132)
chr1 (47-198)||(17352152-17352303)
chr1 (62-127)||(52083104-52083169)
[»] chr5 (4 HSPs)
chr5 (83-251)||(28532258-28532426)
chr5 (47-212)||(32267983-32268148)
chr5 (48-171)||(41901002-41901125)
chr5 (30-251)||(41888935-41889159)
[»] chr6 (1 HSPs)
chr6 (147-251)||(6588716-6588820)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 51764082 - 51763833
Alignment:
Q  2 caaattactaagaaacaaagacaaatttacaacatgtatatcatgcagaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggatacc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51764082 caaattactaagaaacaaagacaaatttacaacatgtatatcattcagaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggatacc 51763983  T
Q  102 aaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcatcag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51763982 aaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcatcag 51763883  T
Q  202 agattttcaaacgcttcaaatcaagagaagtcaaacccttcaaactcacc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51763882 agattttcaaacgcttcaaatcaagagaagtcaaacccttcaaactcacc 51763833  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 21833963 - 21833772
Alignment:
Q  59 atcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttc 158  Q
    ||||| ||||||||||||||  | ||  ||||  ||||||| |||||||| ||||||| ||||||||||||| |||||  || |||||||||||||  |     
T  21833963 atcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgtt 21833864  T
Q  159 aaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttcaaacgcttcaaatcaagagaagtcaaacccttcaaactcac 250  Q
    ||| ||||||||||||||||||| |||||||| ||||||||  |||| | ||||     ||||  |||| ||||||||||||||||||||||    
T  21833863 aaaggaagaccttcccttgcaatagagtagagtaactcatccaagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcac 21833772  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 53761362 - 53761250
Alignment:
Q  139 tttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttcaaacgcttcaaatcaagagaagtcaaacc 238  Q
    ||||||||||||| ||| ||||| |||||| |||| ||||||| ||||||||||||| ||| || |||   ||| ||| ||||| |||||||||||||||    
T  53761362 tttgaaggacaagacttgtcaaaggaagacattcctttgcaatagagtagagcaacttatctgaaattcctaaatgctgcaaattaagagaagtcaaacc 53761263  T
Q  239 cttcaaactcacc 251  Q
    |||||||||||||    
T  53761262 cttcaaactcacc 53761250  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 3438226 - 3438118
Alignment:
Q  62 ttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttcaaa 161  Q
    |||||||||||||||||  | || |||||| ||||||| || | ||| |||| |||||||||||||||| |||||| | || |||||||||||| |||||    
T  3438226 ttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaa 3438127  T
Q  162 agaagacct 170  Q
     ||||||||    
T  3438126 ggaagacct 3438118  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 1755035 - 1755154
Alignment:
Q  93 ttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagtagagca 192  Q
    ||||||| ||||||   ||||||| ||||||||||||| ||||||  |  ||| |||||||| |||||| |||||| || | ||||||| ||||| ||||    
T  1755035 ttggataacaaacatcggattccatcataactatagccggtgcaatgtccaagcacaagcctcttcaaaggaagacttttcattgcaatagagtacagca 1755134  T
Q  193 actcatcagagattttcaaa 212  Q
     |||||| ||||| ||||||    
T  1755135 gctcatccgagatattcaaa 1755154  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 19468132 - 19467894
Alignment:
Q  11 aagaaacaaagacaaatttacaacatgtatatcatgcagaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatg 110  Q
    ||||||||||||||| ||  ||||||    ||||| || ||| ||||||  ||||||||||||||||| ||||| |  ||| ||||||| |||||||| |    
T  19468132 aagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaag 19468033  T
Q  111 attccagcataactatagcccgtgcaa-atttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttc 209  Q
    ||||||||||| |||| |||   |||| ||||| |||||||||||  ||||| | || ||||||| |||||| ||||||||||  ||||||||||| |||    
T  19468032 attccagcatagctatggccaaagcaatatttg-aggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagcatttcatcagagatattc 19467934  T
Q  210 aaacgcttcaaatcaagagaagtcaaacccttcaaactca 249  Q
    | |  |  | ||  ||||||||||||||||||||||||||    
T  19467933 agaaaccaccaagtaagagaagtcaaacccttcaaactca 19467894  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 17352152 - 17352303
Alignment:
Q  47 cagaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaagg 146  Q
    |||||||||||||  |||||||||| ||||||  | |||||| || ||||||| |||| |||   ||||||||||||| ||||| ||| ||  |||||||    
T  17352152 cagaaaaccagcagtttgaagatcctaatgttggatacgttggcacttggataacaaagaaaaagttccagcataactgtagccagtggaatattgaagg 17352251  T
Q  147 acaagccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcat 198  Q
    ||||| ||  | ||| ||| ||| ||| ||||||| ||| ||||||| ||||    
T  17352252 acaagtctcctgaaaggaaaaccctcctttgcaatagaggagagcaattcat 17352303  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 52083104 - 52083169
Alignment:
Q  62 ttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactata 127  Q
    |||||||||||||||||  |||  |||||| || |||| || ||||| ||||||||||||||||||    
T  52083104 ttgaagatccaaatgttgtaaaaattgacattttgataacagacaaaagattccagcataactata 52083169  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 251
Target Start/End: Original strand, 28532258 - 28532426
Alignment:
Q  83 acgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttcaaaagaagaccttcccttgcaatc 182  Q
    |||| |||| ||||||| |||||||| || |||  ||||||||||||||  || | |||  ||||||||| || ||||| |||||||| ||||||||||     
T  28532258 acgtcgacacttggataacaaacaaaagagtccgtcataactatagccccagcgattttttaggacaagctttatcaaaggaagacctccccttgcaata 28532357  T
Q  183 gagtagagcaactcatcagagattttcaaacgcttcaaatcaagagaagtcaaacccttcaaactcacc 251  Q
    | |||||||||||||||||| || || |||   | |||| ||||| ||||||||||||| |||||||||    
T  28532358 gtgtagagcaactcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcacc 28532426  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 32267983 - 32268148
Alignment:
Q  47 cagaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaagg 146  Q
    ||||||| |||||| |||||||||||| ||||  ||| ||||||| |||||||  ||| ||| |||||||| ||| |||||||| ||||||  ||| ||     
T  32267983 cagaaaaacagcattttgaagatccaagtgttggaaatgttgacacttggatagtaaagaaaggattccagaatagctatagccggtgcaatcttggaga 32268082  T
Q  147 acaagccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttcaaa 212  Q
    ||||||||  ||||| |||||| ||    |||||| ||| ||||||||||||| ||||| ||||||    
T  32268083 acaagcctcgtcaaaggaagacattggtatgcaatagaggagagcaactcatctgagatattcaaa 32268148  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 41901125 - 41901002
Alignment:
Q  48 agaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaagga 147  Q
    |||||| |||||| || ||||||||||||||| ||| ||||||| ||||| |  |||||||| ||||||| ||||||||| || |||||| |||| || |    
T  41901125 agaaaaacagcattttcaagatccaaatgttttaaatgttgacacttggacagtaaacaaataattccagaataactataaccggtgcaattttggagaa 41901026  T
Q  148 caagccttttcaaaagaagacctt 171  Q
    |||||||  ||||| | |||||||    
T  41901025 caagcctagtcaaaggtagacctt 41901002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 41889159 - 41888935
Alignment:
Q  30 acaacatgtatatcatgcagaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagc 129  Q
    ||||||||| ||| || ||||||| ||  || ||||||||||||| |||  | | ||| ||| |||||||  ||||||| |||||||||||||||| |||    
T  41889159 acaacatgtttatgattcagaaaaacaatattttgaagatccaaaagttggatatgttcacacttggatagtaaacaaaagattccagcataactaaagc 41889060  T
Q  130 ccgtgcaaatttg-aaggacaa--gccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttcaaacgcttcaaatcaag 226  Q
    | |||||| |||| | ||| ||   |||  ||||||||| ||||| | ||||||| ||| | |||| |||||| ||||| ||||||     |||||||||    
T  41889059 cggtgcaattttgtagggagaaccacctagtcaaaagaaaaccttgcattgcaatagaggaaagcatctcatcggagatattcaaagaaaacaaatcaag 41888960  T
Q  227 agaagtcaaacccttcaaactcacc 251  Q
    | |||||||   |||||||||||||    
T  41888959 acaagtcaagtacttcaaactcacc 41888935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 6588820 - 6588716
Alignment:
Q  147 acaagccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttcaaacgcttcaaatcaagagaagtcaaacccttcaaac 246  Q
    ||||| ||| ||||| |||||| || ||||||||| | ||||||||||||||| ||||| ||||||     |||| ||||| ||||||||| ||||||||    
T  6588820 acaagtcttgtcaaaggaagacgtttccttgcaatagtgtagagcaactcatcggagatattcaaagcagacaaaccaagacaagtcaaactcttcaaac 6588721  T
Q  247 tcacc 251  Q
    |||||    
T  6588720 tcacc 6588716  T

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