View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11474_low_33 (Length: 229)

Name: NF11474_low_33
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11474_low_33
NF11474_low_33
[»] chr4 (10 HSPs)
chr4 (7-209)||(27412813-27413012)
chr4 (7-112)||(27420557-27420662)
chr4 (153-229)||(27420661-27420737)
chr4 (7-124)||(27565820-27565942)
chr4 (10-91)||(27425964-27426045)
chr4 (8-208)||(27569846-27570039)
chr4 (7-220)||(27415770-27415984)
chr4 (7-49)||(27475528-27475570)
chr4 (13-49)||(27509007-27509043)
chr4 (13-45)||(27478836-27478868)
[»] chr5 (1 HSPs)
chr5 (17-166)||(1754847-1754990)
[»] chr3 (1 HSPs)
chr3 (16-90)||(38033683-38033757)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 27412813 - 27413012
Alignment:
Q  7 gtctttcaacatataacttcttgcttcaatgggctatgaatctgagaccaaaagagactgacatagtttagtagagaca-ttttttgtaaactaggcatc 105  Q
    ||||||||||||||||| ||| |||  |||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  27412813 gtctttcaacatataacatctcgctcgaatgggctatgaatctgacaccaaaagaaactgacatagtttagtagagacatttttttgtaaactaggcatc 27412912  T
Q  106 tgatgaaattgtaacgatgggtaaaaactgacactattagattgacaaatttatggagtatatatatattttttgtt-taatgaaaacgaattcgactac 204  Q
    | |||||||||||| |||||| ||||| ||  |||||||||||||||||||||||||  ||||| |||||||||||| |||||||||||||||||||||     
T  27412913 taatgaaattgtaaagatggg-aaaaagtg--actattagattgacaaatttatgga--atataaatattttttgttataatgaaaacgaattcgactat 27413007  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 27420557 - 27420662
Alignment:
Q  7 gtctttcaacatataacttcttgcttcaatgggctatgaatctgagaccaaaagagactgacatagtttagtagagacattttttgtaaactaggcatct 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27420557 gtctttcaacatataacttcttgcttcaatgggctatgaatctgagaccaaaagagtctgacatagtttagtagagacattttttgtaaactaggcatct 27420656  T
Q  107 gatgaa 112  Q
    ||||||    
T  27420657 gatgaa 27420662  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 27420661 - 27420737
Alignment:
Q  153 aatttatggagtatatatatattttttgtttaatgaaaacgaattcgactactcaagctgatcctctatgtttatgt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27420661 aatttatggagtatatatatattttttgtttaatgaaaacgaattcgactactcaagctgatcctctatgtttatgt 27420737  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 27565942 - 27565820
Alignment:
Q  7 gtctttcaacatataacttcttgcttcaatgggctatgaatctgagaccaaaagagactgacatagtttagtagagaca-----ttttttgtaaactagg 101  Q
    ||||| |||||||||||||||||||| ||||| ||||||| || | ||||||  |||||||||||||||||||| || |     ||||||||||||||||    
T  27565942 gtcttccaacatataacttcttgcttgaatggactatgaacctaacaccaaattagactgacatagtttagtagggatatttatttttttgtaaactagg 27565843  T
Q  102 catctgatgaaattgtaacgatg 124  Q
    ||||| || ||||||||| ||||    
T  27565842 catcttatcaaattgtaaagatg 27565820  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 27425964 - 27426045
Alignment:
Q  10 tttcaacatataacttcttgcttcaatgggctatgaatctgagaccaaaagagactgacatagtttagtagagacatttttt 91  Q
    ||||||||||| || ||| |||| ||||| |||||||||||| ||||||| ||||||||||||||||||||| | |||||||    
T  27425964 tttcaacatatgacatctcgcttgaatggcctatgaatctgacaccaaaacagactgacatagtttagtagaaatatttttt 27426045  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 27570039 - 27569846
Alignment:
Q  8 tctttcaacatataacttcttgcttcaatgggctatgaatctgagaccaaaagagactgacatagtttagtagagaca-ttttttgtaaactaggcatct 106  Q
    |||||||||||||||| ||| || | || ||| ||||||||| | |||| ||||||||||||||||||||||| || | |||||||||||||  ||||||    
T  27570039 tctttcaacatataacatctcgcatgaacgggatatgaatctaacaccagaagagactgacatagtttagtagtgatatttttttgtaaact-cgcatct 27569941  T
Q  107 gatgaaattgtaacgatgggtaaaaactgacactattagattgacaaatttatggagtatatatatattttttgtttaatgaaaacgaattcgactactc 206  Q
     |  ||||||||| |||| | ||||| ||  || |||||||||| |||||||| ||    | | |||| ||||||||||||| || ||||||||||||||    
T  27569940 taacaaattgtaaagatgag-aaaaaatg--accattagattgagaaatttataga----acaaatatattttgtttaatgacaatgaattcgactactc 27569848  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 27415770 - 27415984
Alignment:
Q  7 gtctttcaacatataacttcttgcttcaatgggctatgaatctgagaccaaaa-gagactgacatagtttagtaga-----gacattttttgtaaactag 100  Q
    ||||||||||| ||||| ||| |||| || ||  ||||||||| | || |||| ||||||||||||||||||||||     ||||||||| |||||||||    
T  27415770 gtctttcaacacataacatctcgcttgaacggaatatgaatctaacacaaaaaagagactgacatagtttagtagactagagacattttt-gtaaactag 27415868  T
Q  101 gcatctgatgaaattgtaacgatgggtaaaaactgacactattagattgacaaa-tttatggagtatatatatattttttgtttaatgaaaacgaattcg 199  Q
    || | | || ||||||||| |||||| |||||     || |||||||||| |   |||||  ||  ||||||| | ||||||||| ||||||||||||||    
T  27415869 gcctgttatcaaattgtaaagatgggaaaaaag----accattagattgaaattctttatatagcgtatatat-tattttgtttagtgaaaacgaattcg 27415963  T
Q  200 actactcaagctgatcctcta 220  Q
    ||||||||||| | |||||||    
T  27415964 actactcaagcagctcctcta 27415984  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 27475570 - 27475528
Alignment:
Q  7 gtctttcaacatataacttcttgcttcaatgggctatgaatct 49  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  27475570 gtcttccaacatataacttcttgcttgaatgggctatgaatct 27475528  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 27509007 - 27509043
Alignment:
Q  13 caacatataacttcttgcttcaatgggctatgaatct 49  Q
    |||||||||||||||||||||||||| ||||||||||    
T  27509007 caacatataacttcttgcttcaatggactatgaatct 27509043  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 27478868 - 27478836
Alignment:
Q  13 caacatataacttcttgcttcaatgggctatga 45  Q
    |||||||||||||||||||| ||||||||||||    
T  27478868 caacatataacttcttgcttgaatgggctatga 27478836  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 1754847 - 1754990
Alignment:
Q  17 atataacttcttgcttcaatgggctatgaatctgagaccaaaagagactgacatagtttagtagagacattttttgtaaactaggcatctgatgaaattg 116  Q
    ||||||||||| |||| |||||||||| ||| | | || |||||||| |||||||||||||  |||||||||| ||||||||||| |||| || ||||||    
T  1754847 atataacttctagcttaaatgggctataaatttcatac-aaaagagagtgacatagtttag--gagacatttt-tgtaaactaggtatcttatcaaattg 1754942  T
Q  117 taacgatgggtaaaaactgacactattagattgacaaatttatggagtat 166  Q
    ||| |||||| || || ||  |   |||||||||||||||||| ||||||    
T  1754943 taaagatgggaaagaaatg--aggtttagattgacaaatttatagagtat 1754990  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 38033757 - 38033683
Alignment:
Q  16 catataacttcttgcttcaatgggctatgaatctgagaccaaaagagactgacatagtttagtagagacattttt 90  Q
    ||||| |||||| ||||||||||||||| ||||| | || ||| ||||||||||||| |||| ||||| ||||||    
T  38033757 catattacttctcgcttcaatgggctataaatcttacactaaaggagactgacatagattagcagagaaattttt 38033683  T

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