View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_low_4 (Length: 534)
Name: NF11474_low_4
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 268 - 522
Target Start/End: Complemental strand, 16053348 - 16053094
Alignment:
| Q |
268 |
gatagtttggtaatttgaattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaagttgcg |
367 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| || | |
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| T |
16053348 |
gatagtttggtaatttaaattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcagaagaaggatttagtgaagctgtg |
16053249 |
T |
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| Q |
368 |
aggaagcttccgctgttagaaaagcttaacatttcagataccagtctaactgaggtatctattgcagtccttggccgatcttgccctcttttgaaatcac |
467 |
Q |
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|||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16053248 |
aggaagcttccgctgttagagaagcttgtcatttcagataacaggctaactgaggtatctattgcagtccttggccgatcttgccctcttttgaaatcac |
16053149 |
T |
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| Q |
468 |
ttaaatttagtagattgggggattacgccgccaagccttctgatgatttggcctt |
522 |
Q |
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| T |
16053148 |
ttaaaattagtagattgggggtttatgccgccaagccttctgatgatttggcctt |
16053094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 16053581 - 16053403
Alignment:
| Q |
18 |
tatagttcatactataataattttttctttgggagggtgtccaataatgattatgataaagaggaaatggtgaagatttgttgcaatgctattgaacgaa |
117 |
Q |
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| T |
16053581 |
tatagttcatactataataattttttcttttggaaggtgtccaataatgattatgataaagaggaaatggtgaagatttgttgcaatgctattgaacgaa |
16053482 |
T |
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| Q |
118 |
gctgcaatcagttggaagacatcgatattgagggattcggcaa---tgatattcttaattgcatagctaataagtactc |
193 |
Q |
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| T |
16053481 |
gctgcaatcatttggaagacattgatattgagggattcggcaatgatgatattcttaattgcatagctaataagtactc |
16053403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 403
Target Start/End: Complemental strand, 42563836 - 42563729
Alignment:
| Q |
299 |
agtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatt---tattgaagttgcgaggaagcttccgctgttagaaaagctta |
395 |
Q |
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||||||||||||| ||||||||||||| ||||| | |||| ||||||||||||| || ||||| |||||| ||||||| | ||||| |||||| |
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| T |
42563836 |
agtcacctacgttgcatgcggtttgtaaattgcgaatcaattacggatgaaggattttctagtgaagctgcgagaaagcttcggaaattagacaagcttg |
42563737 |
T |
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| Q |
396 |
acatttca |
403 |
Q |
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|||||||| |
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| T |
42563736 |
acatttca |
42563729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 475
Target Start/End: Complemental strand, 36326001 - 36325811
Alignment:
| Q |
285 |
aattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaagttgcgaggaagcttccgctgtt |
384 |
Q |
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|||||||||||||||||||||||| || ||||||| ||||| |||| | | || | || ||||||||| ||||| ||| |||||||||||||| |
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| T |
36326001 |
aattttacagtggcagtcacctactttgcatgcggcttgtaaattgttgggggatgacaaataaaggatttagtgaagccttgagaaagcttccgctgtt |
36325902 |
T |
|
| Q |
385 |
agaaaagcttaacatttcagataccagtctaactgaggtatctattgcagtccttggccgatcttgccctcttttgaaatcacttaaattt |
475 |
Q |
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| T |
36325901 |
agagaaggttgacatttcacattcttatctaactgaggtctctcttgaagcccttggtcgatcttgccctcttttgaaatcgcttaaattt |
36325811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 36309698 - 36309620
Alignment:
| Q |
86 |
ggtgaagatttgttgcaatgctattgaacgaagctgcaatcagttggaagacatcgatattgagggattcggcaatgat |
164 |
Q |
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| T |
36309698 |
ggtgaagatttgttgcaaagctgttgaaagaagttgcgatcatttggaagacatcgatattgagacatttggcaatgat |
36309620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 285 - 475
Target Start/End: Complemental strand, 36313623 - 36313433
Alignment:
| Q |
285 |
aattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaagttgcgaggaagcttccgctgtt |
384 |
Q |
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|||||||||||||||| |||||| || |||| || |||||||||||| ||| | ||||||||||||| ||||| || ||| |||||||||| ||| |
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| T |
36313623 |
aattttacagtggcagacacctatgtcgcatggggcttgtagattgctcgaggattacagatgaaggatttagtgaagctgtgagaaagcttccgcggtt |
36313524 |
T |
|
| Q |
385 |
agaaaagcttaacatttcagataccagtctaactgaggtatctattgcagtccttggccgatcttgccctcttttgaaatcacttaaattt |
475 |
Q |
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|| ||| || |||||| || | |||||||| || ||| ||| || |||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
36313523 |
ggagaaggttgtaatttcacatcactacctaactgatgtctctcttgaagcccttggtcgatcatgccctcttttgaaatcgcttaaattt |
36313433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 36309526 - 36309477
Alignment:
| Q |
285 |
aattttacagtggcagtcacctacgttccatgcggtttgtagattgctat |
334 |
Q |
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|||||| ||||||||||||||| | |||||||||||| |||||||||||| |
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| T |
36309526 |
aattttgcagtggcagtcacctgcattccatgcggttggtagattgctat |
36309477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 29649466 - 29649520
Alignment:
| Q |
348 |
aaggatttattgaagttgcgaggaagcttccgctgttagaaaagcttaacatttc |
402 |
Q |
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| T |
29649466 |
aaggatttattgaagttgcgaaaaagtttccgttgttggaaaagcataacatttc |
29649520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 36327865 - 36327788
Alignment:
| Q |
285 |
aattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcggatgaaggatttattgaag |
362 |
Q |
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|||||||||||||||||||||||| || |||| || ||||| |||||| | ||| | ||||||||||||| ||||| |
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| T |
36327865 |
aattttacagtggcagtcacctactttgcatggggcttgtaaattgctcgaagattacagatgaaggatttactgaag |
36327788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 36321024 - 36320984
Alignment:
| Q |
285 |
aattttacagtggcagtcacctacgttccatgcggtttgta |
325 |
Q |
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||||||||||||||||||||||||||| |||| || ||||| |
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| T |
36321024 |
aattttacagtggcagtcacctacgttgcatgtggcttgta |
36320984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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