View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11474_low_5 (Length: 533)
Name: NF11474_low_5
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 10251877 - 10252393
Alignment:
| Q |
1 |
cattattcatgacctcacttttatacaacttctgacctatcgcttgaacctaaaatttcaaaaacaactcatgaaatatgtacatgatttaattgaatat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| | ||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10251877 |
cattattcatgacatcacttttatacaagttctaaaatatcgctgtaacaaaaaggttaaaaaacaactcatgaaatatgtacatgatttaattgaatat |
10251976 |
T |
|
| Q |
101 |
atgtgtaaaagaaattatatatcaacatctataaattaaatttattgttgaaatgaaatactagtaaaaatgatggccagcatttataaaaataaaggtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10251977 |
atgtgtaaaagaaattatatatcaacatctataaattaaatttattattgaaatgaaatactagtaaaaatgatggccagcatttatgaaaataaaggtc |
10252076 |
T |
|
| Q |
201 |
taactgatcatgggccaatttaaatcaaaagtagatttgtgccctctaaagggtactagaatataaaagatggacggcaaacaagggacacaaagaatag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10252077 |
taactgatcatgggccaatttaaatcaaaagtagatttgtgccctctaaagggtactagaatataaaagatggacggcaaacaagggacacaaagaatag |
10252176 |
T |
|
| Q |
301 |
agatgctcaatttaaaacacaacttcga-nnnnnnnnnatttactaaaaaataacttagattgtttagagaagataggaattcaattagtctaacaacat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10252177 |
agatgctcaatttaaaacacaacttcgattttttttttatttactaaaaaataacttagattgtttagagaagataggaattcaattagtctgacaacat |
10252276 |
T |
|
| Q |
400 |
attttggaagtacaattagtttcacaattaactattttgataatcctccttgttnnnnnnnnnttaatattccatttcgtcaaataaaacaaaaagttag |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10252277 |
attttggaagtacaattagtttcacaattaactattttgataatcctccttattaaaaaaaaattaatattccatttcgtcaaataaaacaaaaagttag |
10252376 |
T |
|
| Q |
500 |
ggagtgacgagagatct |
516 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
10252377 |
ggagtgatgagagatct |
10252393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University