View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11474_low_8 (Length: 495)
Name: NF11474_low_8
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 4 - 481
Target Start/End: Original strand, 13975183 - 13975657
Alignment:
| Q |
4 |
ggagaagcaaagggtttggaatttgtgttaactaaagttcaaaaaagaaagagcgtgcgtcttttagatatcacttgaaagaaaaatccattaaagggag |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13975183 |
ggagaagaaaagggtttggaatttgtgttaactaaagttcaaaaaagaaagagcgtgcgtcttttagatatcacttgaaagaaaaatccattaaagggag |
13975282 |
T |
|
| Q |
104 |
attcaattaataaaaataaatagtaaataacatgaatgagtttcagtttataaatggccaaatgccctaaatttgggtttaattagcagtaccatccggg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13975283 |
attcaattaataaaaataaatagtaaataacatgaatgagtttcagtttataaatggccaaatgccctaaatttgggtttaattagcagtacgatccggg |
13975382 |
T |
|
| Q |
204 |
tattatctcttgttggtttaaatcattatgagtctatactttggagtttgaaaatagaacacacacaaaatggggtgggacatttaacgattccctccaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
13975383 |
tattatctcttgttggtttaaatcattatgagtctatactttggagtttgaaaatagaacccacataaaatgggatgggacatgtaacgattccctccaa |
13975482 |
T |
|
| Q |
304 |
tnnnnnnntgaatatgtcaaagagagtgttcaaaaatgagtgttgcaagtatttgtcaagtttatatgatcaaaagttctctatgatggtccatgcaagg |
403 |
Q |
| |
|
| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13975483 |
taaaaaagtga--atgttaaagagagtgttcaaaaatgagtgttgcatgtatttgtcaagtttatatgatcaaaaattctctatgatggtccatgcaagg |
13975580 |
T |
|
| Q |
404 |
tagcatcattatcttattatttaaagatgacgtccaannnnnnnnnagagtgcacaaaagaatagaatagttgttgtt |
481 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13975581 |
ttgcatcattatcttattatttaaagatgacgtccaa-ttttttttagagtgcacaaaagaatagaatagttgttgtt |
13975657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 10950223 - 10950186
Alignment:
| Q |
209 |
tctcttgttggtttaaatcattatgagtctatactttg |
246 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| |
|
|
| T |
10950223 |
tctcttattagtttaaatcattatgagtctatactttg |
10950186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 239
Target Start/End: Complemental strand, 41727567 - 41727537
Alignment:
| Q |
209 |
tctcttgttggtttaaatcattatgagtcta |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41727567 |
tctcttgttggtttaaatcattatgagtcta |
41727537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 55452065 - 55452097
Alignment:
| Q |
216 |
ttggtttaaatcattatgagtctatactttgga |
248 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
55452065 |
ttggtttaaatcattatgagtctacactttgga |
55452097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University