View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11474_low_9 (Length: 490)
Name: NF11474_low_9
Description: NF11474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11474_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 12 - 474
Target Start/End: Complemental strand, 40409798 - 40409334
Alignment:
| Q |
12 |
tgcatgacacaaggtacagcaccagtctccgataaatcaaatcaaccatataataaaccaaatcata--tatatctaggacaccattatggggcaatcat |
109 |
Q |
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| T |
40409798 |
tgcatgacacaaggtacagcaccagtctccgataaatcaaatcaaccatataataaaccaaatcatacatatatctaggacaccattatggggcaatcat |
40409699 |
T |
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| Q |
110 |
tggctaatacatttgatgttagccactgaaaagtacgtatgtataaaaaagcagagaaatggggaatcatatctaggtctaggtggtcgaaattggcacc |
209 |
Q |
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| T |
40409698 |
tggctaatacatttgatgttagccactgaaaagtacgtatgtataaaaaagcagagaaatggggaatcatatctaggtctaggtggtcgaaattggcacc |
40409599 |
T |
|
| Q |
210 |
cccctatgcccatgtaataaacattgatcatttgattgacattgatataaagcgcgaattaattaagaagacagagttgatatggatacaagttgacaaa |
309 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40409598 |
cccccatgcccatgtaataaacattgatcatttgattgacattgatataaagcgcgaattaattaagaagacagagttgatatggatacaagttgacaaa |
40409499 |
T |
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| Q |
310 |
tactctaatgaggttttaggagagtgaatgattttaatattatcctaatggttttatggatacaaattgaataaaagtaagatgaatctacatttcgtgt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40409498 |
tactctaatgaggttttaggagagtgaatgattttaatattatcctaatggttttatggatacaaattgaataaaagtaagatgaatctacatttcgtgt |
40409399 |
T |
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| Q |
410 |
atgatatctcaatcaattttaaaggttgtaaacgttcctattaatcctttagtgttgttttgatg |
474 |
Q |
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| T |
40409398 |
atgatatctcaatcaattttaaaggttgtaagcgttcctattaatcatttagtgttgttttgatg |
40409334 |
T |
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