View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_high_1 (Length: 774)
Name: NF11475_high_1
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 25772144 - 25771762
Alignment:
| Q |
20 |
aagcctacctccttttgcctcacagtggtgggattccccatgtctccctctttaacaattattcacctttaacaccaaagtgcaatgatccgatatatct |
119 |
Q |
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| T |
25772144 |
aagcgtacctccttttgcctcaaagtggtgggattccccatgtctccctctttaacaattattcacctttaacaccaaagaacaatgatccgatatatct |
25772045 |
T |
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| Q |
120 |
cgcggaggcacccacaacacttaattcccctaataattagttcattcttccgcgaaacaagaattctatcaatccaactgatttcacgatcatttgaatg |
219 |
Q |
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| T |
25772044 |
cgcggaggcacccacaacacttaattcccctaataattaattcattcttccg--aaacaagaattctatcaatccaactcatttcatgatcatttgaatg |
25771947 |
T |
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| Q |
220 |
ataccatgtgaacctcctcccaatcggactaacatcctcaagcttcaattgtctcaataaaatagtaaaaagattcatttccaaaatatgagctgaggac |
319 |
Q |
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| T |
25771946 |
ataccatgtgaacctcctcccaatcggactaacatcctcaagctccaattgtctcaataaaatagtaaaaagattcatttccaaaatatgagctgaggac |
25771847 |
T |
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| Q |
320 |
atttcctcatcaaccccccttctctcctccaccccactaaccacattaatgttttaggagtttctactccaggtgttatttcaat |
404 |
Q |
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| T |
25771846 |
atttcctcttcaaccccccttctctgtcacaccccactaaccacattaatgttttaggagtttctactccaggtgttatttcaat |
25771762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 665 - 766
Target Start/End: Complemental strand, 25771693 - 25771592
Alignment:
| Q |
665 |
aattgagttttctattggaattgagaagacacatttatgtgattgaggccagtttacaatcttaaattcaagttttgcaatgcaaataccgtgttctctg |
764 |
Q |
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| T |
25771693 |
aattgagttttctattggaattgagaagacacattcatgtgattgaggccagtttacaatcttaaattcaagttttgcaatgcaaataccgtgttctctg |
25771594 |
T |
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| Q |
765 |
ct |
766 |
Q |
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|| |
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| T |
25771593 |
ct |
25771592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 474 - 621
Target Start/End: Complemental strand, 25745209 - 25745062
Alignment:
| Q |
474 |
atttataattttgtaatgctctttttatgtataatagagtgtgtttaaaatctgaggtcatatgtgcattagactaatcaaattcgggacgttagatcat |
573 |
Q |
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| T |
25745209 |
atttataaatttgcaatgttctttttatgtataacagggtgagtttataatctgagtttatacatgaattaaactaatcaaattatagacattagatcat |
25745110 |
T |
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| Q |
574 |
atcatctgaaggtgatgttggcgaaacagagaaattacattttctaat |
621 |
Q |
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| T |
25745109 |
agcatctgaagatgatgtaggcgaaacagataaattagattttctaat |
25745062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 507
Target Start/End: Complemental strand, 25731238 - 25731171
Alignment:
| Q |
440 |
aaaaataaaataaattaaagagacctcatgtttcatttataattttgtaatgctctttttatgtataa |
507 |
Q |
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| T |
25731238 |
aaaaataaaataaactaaagagacaccttatctaatttataattttataatgttctttttatgtataa |
25731171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 724 - 766
Target Start/End: Original strand, 45301953 - 45301995
Alignment:
| Q |
724 |
tcttaaattcaagttttgcaatgcaaataccgtgttctctgct |
766 |
Q |
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| T |
45301953 |
tcttaaattcaagttttgcaatgcacataccttgtcctctgct |
45301995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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