View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_high_11 (Length: 487)
Name: NF11475_high_11
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 21 - 480
Target Start/End: Complemental strand, 3746155 - 3745696
Alignment:
| Q |
21 |
tcacctataccatattcagaagtgtgtacatatgaactgcaaaaggaacatagctcaatgtgtgactacatctcataggatgagaacgggagatgttatg |
120 |
Q |
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| T |
3746155 |
tcacctataccatattcagaagtgtgtacatatgaactgcaaaaggaacatagctcaatgtgtgactacatctcataggatgagaacgggagatgttatg |
3746056 |
T |
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| Q |
121 |
cttttaacaaacaaaagaataatgataaaaaccttgtttcctttgcattcaaagattttggtaccaaacaaataaccaggtttggaggatgttagagctc |
220 |
Q |
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| T |
3746055 |
cttttaacaaacaaaagaataatgataaaaaccttgtttcctttgcattcaaagattttggtaccaaacaaataaccaggtttggaggatgttagagctc |
3745956 |
T |
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| Q |
221 |
ttgttattaccagaggcatgatggcattaatgctcatgttagagatacaatatataatgttgtggctagtaaatggtgaaatcagtattgatttcacatg |
320 |
Q |
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| T |
3745955 |
ttgttattaccagaggcctgatggcattaatgctcatgttagagatacaatatataatgttgtggctagtaaatggtgaaatcagtattgaattcacatg |
3745856 |
T |
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| Q |
321 |
tatatttggaaatcaattaacatttcaacaataaannnnnnnnnnnnnatcaaattctattcgaaattggtagaattttatactcttgagaattggattt |
420 |
Q |
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| T |
3745855 |
tatatttggaaatcaatcaacatttcaacaataacttttttcctttttatcaaattctattcgaaattggtagaattttatactcttgagaattggattt |
3745756 |
T |
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| Q |
421 |
tatcgattcatccgtagaatccgtttcatctccttcatgaggattttatcggttcatctc |
480 |
Q |
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| T |
3745755 |
tatcgattcatccgtagaatccgtttcatctccttcatgaggattttatcggttcatctc |
3745696 |
T |
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