View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_high_13 (Length: 459)
Name: NF11475_high_13
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Complemental strand, 5723169 - 5722731
Alignment:
| Q |
17 |
atgagactcactttaaaattagtaaattatattccgagaaatctatttattgtggctttagtacacttgcaataaaaattgtgctacaccgttgaaaaaa |
116 |
Q |
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| T |
5723169 |
atgagactcgctttaaaattagtaaattatattccgagaaatctatttattgtggctttagtacacttgcaataaatattgtgctacaccgttgaaaaaa |
5723070 |
T |
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| Q |
117 |
taattaaaatatagtaaataagagtagtgctatttctcccgagaaaatccattacgaacacatcacaaataaaggataggcattggattttggannnnnn |
216 |
Q |
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| T |
5723069 |
taattgaaatatagtaaataagagtagtgctatttctcccgagaaaatccattacgaacacatcgcaaataaaggataggcattgaattttggatttttt |
5722970 |
T |
|
| Q |
217 |
nn-acaattacgtcggttgatgaatatgacacagattttgttactgttacaattacaactgccgtgataatgccgggacaaaaactttcggaataactag |
315 |
Q |
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| T |
5722969 |
tttacaattacgtcggttgatgaatatgacacagattttgttactgttacaattacaactgccgtgataatgccgggacaaaaactttcggaataactag |
5722870 |
T |
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| Q |
316 |
caatgtcgtataaacaaacatctattaaaatacatggaaaatgaaagcctatttcaaaatgcatgaattgaatttatgttcgtggctgtgaacttgttat |
415 |
Q |
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| T |
5722869 |
caatgtcgtataaacaaacatctattaaaatacatggaaaatgaaagcctatttcaaaatgcatgaattgaatttatgttcgtggctgtgaacttgttat |
5722770 |
T |
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| Q |
416 |
agtcccatcacgaattttatttttggttttcatctctct |
454 |
Q |
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| T |
5722769 |
agtcccatcacgaattttgtttttggttttcatctctct |
5722731 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 33493419 - 33493327
Alignment:
| Q |
232 |
ttgatgaatatgacacagattttgttactgttacaattacaactgccgtgataatgccgggacaaaaactttcggaataactagcaatgtcgt |
324 |
Q |
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|||||||| |||| | | || |||||||||||||||||||||||| || ||||| |||||||||| |||||| ||||||||||||||||| |
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| T |
33493419 |
ttgatgaaaatgataaaaatcttgttactgttacaattacaactgtcgagataaaatcgggacaaaagctttcgagataactagcaatgtcgt |
33493327 |
T |
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