View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11475_high_14 (Length: 434)

Name: NF11475_high_14
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11475_high_14
NF11475_high_14
[»] chr3 (6 HSPs)
chr3 (18-343)||(53424378-53424703)
chr3 (30-273)||(53431594-53431843)
chr3 (334-426)||(53424066-53424158)
chr3 (29-287)||(48373873-48374134)
chr3 (36-87)||(26096526-26096577)
chr3 (238-283)||(53308910-53308955)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 53424703 - 53424378
Alignment:
Q  18 aaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53424703 aaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgaca 53424604  T
Q  118 agattaaaatggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatgatttcccagcaaccgtggt 217  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53424603 agattaaaatggcgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatgacttcccagcaaccgtggt 53424504  T
Q  218 aagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaatttacggtatatcaagaagattaa 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53424503 aagaacaagagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaatttacggtatatcaagaagattaa 53424404  T
Q  318 tggatatacaccatcaatataaagtt 343  Q
    ||||||||||||||||||||||||||    
T  53424403 tggatatacaccatcaatataaagtt 53424378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 30 - 273
Target Start/End: Complemental strand, 53431843 - 53431594
Alignment:
Q  30 tgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcata---gatgatggttacacaatctatgacaagattaaaa 126  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||| |||   ||||||| |||| ||| | || |||| |||||||    
T  53431843 tgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatggaataagtgatgatgattactcaaccaataacaaaattaaaa 53431744  T
Q  127 tggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattat---gatttcccagcaaccgtggtaagaac 223  Q
     |||||||| ||||||||||||||||||||||||||||| |||||| || ||||    |  | | | ||||   || ||||||||||| ||||||||| |    
T  53431743 cggtgcaagggatgggtggattaggtcttgttcatattactgaccaggatggagctatgatacgtagttatggagacttcccagcaacagtggtaagatc 53431644  T
Q  224 aaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat 273  Q
    |||||||| ||||||| |||||||||| | ||||||||||||||||||||    
T  53431643 aaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcat 53431594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 53424158 - 53424066
Alignment:
Q  334 atataaagttattttacactcacattcaatcagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc 426  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53424158 atataaagttattttacactcacattcaattagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc 53424066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 29 - 287
Target Start/End: Original strand, 48373873 - 48374134
Alignment:
Q  29 gtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgacaagattaaaatg 128  Q
    |||||| |||| ||||||||||| ||| |||||  ||||||| |||||||| || |||||  |||||| || |||  ||| | |||| || ||||  | |    
T  48373873 gtgtcatccaagttcattagataagaaaaaagttgaaggaaatattgtcatctgcgatggggtagatggtgattattcaaccgatgaaaaaattaggacg 48373972  T
Q  129 gtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatg---atttcccagcaaccgtggtaagaacaa 225  Q
    |||||||||  |||||||||||||||||||||||||| |||||| || ||||  | |||||  | |||||   | ||||||||||| ||||||||| |||    
T  48373973 gtgcaagaggcgggtggattaggtcttgttcatattactgaccaggatggagctgtggcaaatatttatgcagacttcccagcaacagtggtaagatcaa 48374072  T
Q  226 aagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagtttttta 287  Q
    |||||| || |||| ||||| |||||||||||||||| ||||| ||||||||||| ||||||    
T  48374073 aagatgttgtcacactcctcaaatatgtcaattcaacgaggtaagcattttaaaggttttta 48374134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 26096577 - 26096526
Alignment:
Q  36 ccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatg 87  Q
    |||| ||||||||| | ||| |||||||||||||||||||||||||||||||    
T  26096577 ccaagttcattagacaagaaaaaagtcaaaggaaagattgtcatatgtgatg 26096526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 53308955 - 53308910
Alignment:
Q  238 caatcctccaatatgtcaattcaacaaggtatgcattttaaagttt 283  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||||    
T  53308955 caatactccaatatgtcaattcaacaaggtaagcattataaagttt 53308910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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