View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_high_17 (Length: 377)
Name: NF11475_high_17
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 358
Target Start/End: Original strand, 5171759 - 5172108
Alignment:
| Q |
4 |
cggtagttaactgccgctgatattgaatgaacatcaattaactactgtgaataaacgaacgaatgatagttaactgcggttgaaatagcaagtgcctaaa |
103 |
Q |
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| T |
5171759 |
cggtagttaactgccgctgatattgaatgaacatcaattaaatactgtaaataaacgaa----tgatagttaactgccgttgaaatagcaagtgcctaaa |
5171854 |
T |
|
| Q |
104 |
gagcaattatctttccaactgagtacataactgcctccgctagaggtaacaaagggcccaacataaaagcacagtttatatagacacaacaacaaactgt |
203 |
Q |
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| T |
5171855 |
gagcaattatctt-ccaactgagcacataactgcctccgctagaggtaacaaagggcccaacataaaagcacaggttatatagacacaacaacaaactgt |
5171953 |
T |
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| Q |
204 |
tagtgttgggtacaacagccacgtttcaatctgtaaaattcagttgtgttaggaatgatgaaggggtcctacgagatttctatggtgagaaatatgagct |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5171954 |
tagtgttgggtacaacagccacgtttcaatctgtaaaattcagctgtgttaggaatgatgaaggggtcctacgagatttctatggtgagaaatatgagct |
5172053 |
T |
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| Q |
304 |
ttaagcttaatacagaaaatatgaggccttatatcatcttggatcttccacctct |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5172054 |
ttaagcttaatacagaaaatatgaggccttatatcatcttggatcttccacctct |
5172108 |
T |
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