View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11475_high_19 (Length: 332)

Name: NF11475_high_19
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11475_high_19
NF11475_high_19
[»] chr5 (2 HSPs)
chr5 (18-153)||(39785496-39785632)
chr5 (104-145)||(3040352-3040393)
[»] chr2 (4 HSPs)
chr2 (104-153)||(20142943-20142992)
chr2 (101-145)||(38320292-38320336)
chr2 (106-153)||(13716794-13716841)
chr2 (104-141)||(31645194-31645231)
[»] chr1 (3 HSPs)
chr1 (104-153)||(10061567-10061616)
chr1 (105-145)||(35149756-35149796)
chr1 (111-145)||(26469926-26469960)
[»] chr3 (1 HSPs)
chr3 (89-153)||(45853018-45853082)
[»] chr7 (1 HSPs)
chr7 (106-145)||(46297590-46297629)
[»] chr6 (2 HSPs)
chr6 (106-145)||(32871845-32871884)
chr6 (117-145)||(34713489-34713517)
[»] chr4 (3 HSPs)
chr4 (106-145)||(37762782-37762821)
chr4 (104-145)||(24060551-24060592)
chr4 (98-135)||(35033017-35033054)
[»] chr8 (2 HSPs)
chr8 (253-298)||(37425808-37425853)
chr8 (117-145)||(38585180-38585208)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 39785496 - 39785632
Alignment:
Q  18 gaaatgaatactctatcttgagttcgagattacagtttcttaaaatatgtaaaatacaaaaattaacggtcttttaaaaaagtatc-gttatttctctaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||| | ||     
T  39785496 gaaatgaatactctatcttgagttcgagattacagtttcttaaaatatgtaaaatacaaaaattaacagtcttttcaaaaagcatcagttatttatttag 39785595  T
Q  117 agagtttttatcaagaatttatcaagaaacagtctca 153  Q
    ||| |||||||||| ||||||||||||||| ||||||    
T  39785596 agaatttttatcaaaaatttatcaagaaacggtctca 39785632  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 3040393 - 3040352
Alignment:
Q  104 gttatttctctaaagagtttttatcaagaatttatcaagaaa 145  Q
    |||||||  ||| |||||||||||||||||||||||||||||    
T  3040393 gttatttacctagagagtttttatcaagaatttatcaagaaa 3040352  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 20142943 - 20142992
Alignment:
Q  104 gttatttctctaaagagtttttatcaagaatttatcaagaaacagtctca 153  Q
    ||||||| |||| ||||||||||||||||||||||||||||| |||||||    
T  20142943 gttatttatctagagagtttttatcaagaatttatcaagaaaaagtctca 20142992  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 38320336 - 38320292
Alignment:
Q  101 atcgttatttctctaaagagtttttatcaagaatttatcaagaaa 145  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  38320336 atcgttatttatctagagagtttttatcaagaatttatcaagaaa 38320292  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 13716841 - 13716794
Alignment:
Q  106 tatttctctaaagagtttttatcaagaatttatcaagaaacagtctca 153  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||||||    
T  13716841 tatttatctagagagtttttatcaagaatttatcaagaaaaagtctca 13716794  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 31645231 - 31645194
Alignment:
Q  104 gttatttctctaaagagtttttatcaagaatttatcaa 141  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  31645231 gttatttatctagagagtttttatcaagaatttatcaa 31645194  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 10061567 - 10061616
Alignment:
Q  104 gttatttctctaaagagtttttatcaagaatttatcaagaaacagtctca 153  Q
    ||||||| |||| ||||||||||||||||||||||||| ||| |||||||    
T  10061567 gttatttatctagagagtttttatcaagaatttatcaaaaaaaagtctca 10061616  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 35149796 - 35149756
Alignment:
Q  105 ttatttctctaaagagtttttatcaagaatttatcaagaaa 145  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  35149796 ttatttatctagagagtttttatcaagaatttatcaagaaa 35149756  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 26469926 - 26469960
Alignment:
Q  111 ctctaaagagtttttatcaagaatttatcaagaaa 145  Q
    ||||| |||||||||||||||||||||||||||||    
T  26469926 ctctagagagtttttatcaagaatttatcaagaaa 26469960  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 45853082 - 45853018
Alignment:
Q  89 ttttaaaaaagtatcgttatttctctaaagagtttttatcaagaatttatcaagaaacagtctca 153  Q
    |||||||| || || ||||||| |||| |||| |||||||||||||| ||||||||| |||||||    
T  45853082 ttttaaaagagcattgttatttatctatagagattttatcaagaattaatcaagaaaaagtctca 45853018  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 46297590 - 46297629
Alignment:
Q  106 tatttctctaaagagtttttatcaagaatttatcaagaaa 145  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  46297590 tatttatctagagagtttttatcaagaatttatcaagaaa 46297629  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 32871884 - 32871845
Alignment:
Q  106 tatttctctaaagagtttttatcaagaatttatcaagaaa 145  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  32871884 tatttatctagagagtttttatcaagaatttatcaagaaa 32871845  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 34713489 - 34713517
Alignment:
Q  117 agagtttttatcaagaatttatcaagaaa 145  Q
    |||||||||||||||||||||||||||||    
T  34713489 agagtttttatcaagaatttatcaagaaa 34713517  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 37762782 - 37762821
Alignment:
Q  106 tatttctctaaagagtttttatcaagaatttatcaagaaa 145  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  37762782 tatttatctaaagagttttcatcaagaatttatcaagaaa 37762821  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 24060551 - 24060592
Alignment:
Q  104 gttatttctctaaagagtttttatcaagaatttatcaagaaa 145  Q
    ||||||| |||||||| ||||||||||||||| |||||||||    
T  24060551 gttatttatctaaagaatttttatcaagaattgatcaagaaa 24060592  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 35033017 - 35033054
Alignment:
Q  98 agtatcgttatttctctaaagagtttttatcaagaatt 135  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  35033017 agtattgttatttatctaaagagtttttatcaagaatt 35033054  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 37425808 - 37425853
Alignment:
Q  253 atattctatcaattgcaggaggagcaactgatttagcaattgacaa 298  Q
    ||||||||||||||| |||||||||||||| || |||| |||||||    
T  37425808 atattctatcaattgtaggaggagcaactgcttcagcatttgacaa 37425853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 38585208 - 38585180
Alignment:
Q  117 agagtttttatcaagaatttatcaagaaa 145  Q
    |||||||||||||||||||||||||||||    
T  38585208 agagtttttatcaagaatttatcaagaaa 38585180  T

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