View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11475_high_2 (Length: 708)
Name: NF11475_high_2
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 165 - 704
Target Start/End: Original strand, 10916353 - 10916890
Alignment:
| Q |
165 |
tttctttctcgtattttgtcaatgtttcaaatttaaagcaaaaaatctctgcttcaatttggtctcatccaaattctagggttcaatttgattccagttt |
264 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
10916353 |
tttctttcttgtattttgtcattgtttcaaatttaaagcaaaaaatctctgcttcaatttggtctcatccaaattatagggttcaattggattccagttt |
10916452 |
T |
|
| Q |
265 |
cttgactttgattccttattcactatttcgatgatgatgatgattcttattcgcttgtgtgaatcgttatttcttctttgttttccatgttatcggcact |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10916453 |
cttgactttgattccttattcactatttcgatgatgatgatgatt-ttattcgcttgtgtgaatcgttctttcttctttgttttccatgttatcggcact |
10916551 |
T |
|
| Q |
365 |
tattttcattgattcgaaatcttagtttctcgattttttgttcttgcttgttgactgagttttgatttctacattggcagttgttcatgagttggtttca |
464 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10916552 |
tattttcattgattcgagatcttagtttctcgattttttgttcttgcttgttgactgagttttgatttctacattggcagttgttcatgagttggtttca |
10916651 |
T |
|
| Q |
465 |
agacctataaattgattttgaatatgttttcaagtttctttcatcaatttgtagtttttattggatttgatatttgatcttgcttcatacagtttgctag |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10916652 |
agacctataaattgattttgaatatgttttcgagtttctttcatcaatttgtagtttttattggatttgata-ttgatcttgcttcatacagtttgctag |
10916750 |
T |
|
| Q |
565 |
catcatcttcatttatgcaattggcttaggaagttttgaagcttctcgagttgaaatgctcaagcatcatcttcttgacaatttgtgtagtgttgtaagt |
664 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10916751 |
catcatcttcattgatgcaattggcttaggaagttttgaagcttctcgagttgaactgctctagcatcatcttcttgaaaatttgtgtagtgttgtaagt |
10916850 |
T |
|
| Q |
665 |
tgttcaagtttattgaacaatacaccgtcttcatctcact |
704 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10916851 |
tgttcaagtttattgaacaatacatcgtcttcatctcact |
10916890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 10916189 - 10916243
Alignment:
| Q |
19 |
attagagcatatttggtatccattttaaaggacttttctgctgcataaaaatcca |
73 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
10916189 |
attagagcatatttggtattcactttaaaggacttttctgctgcataaaaatcca |
10916243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 10916292 - 10916326
Alignment:
| Q |
136 |
ggagaaaaatattatttttctgcaatttatttctt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
10916292 |
ggagaaaaatattatttttctgcaatttgtttctt |
10916326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University