View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_high_20 (Length: 331)
Name: NF11475_high_20
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 321
Target Start/End: Complemental strand, 37278127 - 37277829
Alignment:
| Q |
22 |
acgaaatcggggagagtaacaactaattggagcaagttttgttgtatttttagggacaagttttgttgttaaagaatcaaaatctgcaagtctttatnnn |
121 |
Q |
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| T |
37278127 |
acgaaatcggggagagtaacaactaattggagcaagttttgttgtatttttagggacaagttttgttgttaaagaatcaaaatatgcaagtctttataaa |
37278028 |
T |
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| Q |
122 |
nnnntgtttttatttacatttgtgtttgtatggacctaaatctcatttaagttcaacttaatcaaatgtacatatcacgatttcaatactatttgattat |
221 |
Q |
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| T |
37278027 |
taa-tgtttttatttacatttgtgtttgtatggacctaaatctcatttaagttcaacttaatcaaatgtacatatcacgatttcaatactgtttggttat |
37277929 |
T |
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| Q |
222 |
gcgtctaatctctaaatcttgcgttccattgttgtttcctcagcacttttacgaagctagatattcaagcttccatcttacttgcaccacgaccttcatc |
321 |
Q |
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| T |
37277928 |
gcgtctaatctctaaatcttgcgtcccattgttgtttcctctgcacttttacgaagctagatattcaagcttccatcttacttgcaccacgaccttcatc |
37277829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 37262836 - 37262777
Alignment:
| Q |
126 |
tgtttttatttacatttgtgtttgtatggacctaaatctcatttaagttcaacttaatca |
185 |
Q |
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| T |
37262836 |
tgtttttaattacatttgtgttggtatggtcctaaatctcatttacgtgcaacttaatca |
37262777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 37266544 - 37266500
Alignment:
| Q |
126 |
tgtttttatttacatttgtgtttgtatggacctaaatctcattta |
170 |
Q |
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| T |
37266544 |
tgtttttaattacatttgtgttggtatggtcctaaatctcattta |
37266500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 37266453 - 37266377
Alignment:
| Q |
175 |
caacttaatcaaatgtacatatcacgatttcaatactatttgattatgcgtctaatctctaaatcttgcgttccatt |
251 |
Q |
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|||| ||||||||| | ||||||| |||||| || | |||| |||||| |||||||||||||||| |||| ||||| |
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| T |
37266453 |
caacataatcaaattttcatatcatgatttcgatcttgtttggttatgcatctaatctctaaatctcgcgtcccatt |
37266377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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