View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11475_high_22 (Length: 303)
Name: NF11475_high_22
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 30020039 - 30019752
Alignment:
| Q |
1 |
ataatcaagatattgcatacgaaagaataattttgttaagtttgaaattgagggtgtaatatatatgcaacatatatagaagaaaaccaaatgatgattt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30020039 |
ataatcaagataatgcatacgaaagaataattttgttaagtttgaaattgagggtgcaatatatatgcaacata----gaagaaaaccaaatgatgattt |
30019944 |
T |
|
| Q |
101 |
cacacacaaacatgcattttatacctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatccaaaatatcatcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30019943 |
cacacacaaacatgcattttatacctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatccaaaatatcatcaa |
30019844 |
T |
|
| Q |
201 |
cacttcttgtctgaaatgcaaaccttggcacttttgttgtcttcttcactctcccacctttaacccttttctcctctaacttgtttcccttt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30019843 |
cacttcttgtctgaaatgcaaaccttggcacttttgtggtcttcttcactctcccacctttaacccttttctcctctaacttgtttcccttt |
30019752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 9606942 - 9606879
Alignment:
| Q |
123 |
acctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatc |
186 |
Q |
| |
|
|||||||| | ||| |||| || ||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
9606942 |
acctgggaaatttgttgtttttaacagctttttggccatatttcctccatctataaccatcatc |
9606879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 9834513 - 9834450
Alignment:
| Q |
123 |
acctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatc |
186 |
Q |
| |
|
|||||||| | ||| |||| || ||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
9834513 |
acctgggaaatttgttgtttttaacagctttttggccatatttcctccatctataaccatcatc |
9834450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University