View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11475_high_28 (Length: 260)
Name: NF11475_high_28
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 30020177 - 30020356
Alignment:
| Q |
63 |
ggtcaaataaatcaatctaactagaacaaaatactaaattttaactttaggcgtatgaattaaattaattaccctccaaactttaagaagggtacannnn |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30020177 |
ggtcaaataaatcaatctaactagaacaaaatactaaattttaactttaggcgtatgaattaaattaattaccctccaaacattaagaagggtacatttt |
30020276 |
T |
|
| Q |
163 |
nnnngacaaaagaggggtacactttgttaaagcgaaatatcgtgaccttgtggattatatacatcgtaaccattgcaattgc |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30020277 |
ttttgacaaaagaggggtacactttgttaaagcgaaatatcgtgaccttgtggat--tatacatcgtaaccattgcaattgc |
30020356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University