View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11475_high_33 (Length: 246)

Name: NF11475_high_33
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11475_high_33
NF11475_high_33
[»] chr1 (5 HSPs)
chr1 (18-246)||(9828656-9828883)
chr1 (42-246)||(9755205-9755408)
chr1 (18-244)||(9803814-9804054)
chr1 (189-230)||(9708599-9708640)
chr1 (101-161)||(9755892-9755952)
[»] scaffold0432 (2 HSPs)
scaffold0432 (17-194)||(7141-7319)
scaffold0432 (194-228)||(7334-7368)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 9828656 - 9828883
Alignment:
Q  18 atgatcttgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctccatcttgtgacttgctagaggtgacttcacaactagataca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9828656 atgatcttgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctccatcttgtgacttgctagaggtgacttcacaactagataca 9828755  T
Q  118 tcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattgattcagcatcatcatttgttggaatactttgctga 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9828756 tcaaaatcatcaacaataaaacctttcgagtttccttcctcactttg-tgataagtcctctattgattcagcatcatcatttgttggaatactttgctga 9828854  T
Q  218 tagttgaccttatcatcatgacttttggt 246  Q
    |||||||||||||||||||||||||||||    
T  9828855 tagttgaccttatcatcatgacttttggt 9828883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 42 - 246
Target Start/End: Original strand, 9755205 - 9755408
Alignment:
Q  42 attcaaatcagagtcgacatcaccattatgtcctccatcttgtgacttgctagaggtgacttcacaactagatacatcaaaatcatcaacaataaaacct 141  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  9755205 attcaaatcagagtccacatcaccattacgtcctccatcttgtgacttgctagaggtgacttcacaaccagataaatcaaaatcatcaacaataaaacct 9755304  T
Q  142 ttcgagtttctttcctcactttgttgataagtcctctattgattcagcatcatcatttgttggaatactttgctgatagttgaccttatcatcatgactt 241  Q
    ||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9755305 ttcaagtttccttcctcactttg-tgataagtcctctattgattcagcatcatcatttgttggaatactttgctgatagttgaccttatcatcatgactt 9755403  T
Q  242 ttggt 246  Q
    |||||    
T  9755404 ttggt 9755408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 9803814 - 9804054
Alignment:
Q  18 atgatcttgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctccatcttgtgacttgctagaggtgacttcacaactagataca 117  Q
    ||||| ||||||||| ||  ||||||||||||||||||| ||||||||||||  |||||||||||| ||| ||||||||||||||| |||||||||||||    
T  9803814 atgatattgtaaatcatgcgagttattcaaatcagagtctacatcaccattacatcctccatcttgggacatgctagaggtgacttgacaactagataca 9803913  T
Q  118 tcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattgat---------------tcagcatcatcatttgtt 202  Q
    ||||||||||| || |||||| || |  |||||| ||| || ||||| |||||||||||||||||||               | ||| || |||||||||    
T  9803914 tcaaaatcatcgacgataaaatctataaagtttccttcttcgctttg-tgataagtcctctattgatccataatcattatcatgagcctcttcatttgtt 9804012  T
Q  203 ggaatactttgctgatagttgaccttatcatcatgacttttg 244  Q
    |||||||||||||||||||||||||||||| ||||| |||||    
T  9804013 ggaatactttgctgatagttgaccttatcaccatgaattttg 9804054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 9708599 - 9708640
Alignment:
Q  189 catcatcatttgttggaatactttgctgatagttgaccttat 230  Q
    ||||||||||| |||||||||| |||||||| ||||||||||    
T  9708599 catcatcattttttggaatactctgctgatacttgaccttat 9708640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 9755892 - 9755952
Alignment:
Q  101 cttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcact 161  Q
    ||||||||  |||| ||||||||||||||||||||||| | |||  ||||| |||||||||    
T  9755892 cttcacaatcagatgcatcaaaatcatcaacaataaaatcattcatgtttccttcctcact 9755952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 7141 - 7319
Alignment:
Q  17 catgatcttgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctc--catcttgtgacttgctagaggtgacttcacaactagat 114  Q
    |||||||||||||||| ||  ||| ||| ||||||||||| |||||||| ||| ||||||  | ||||||||||||||||||| ||||||||| ||||||    
T  7141 catgatcttgtaaatcatgcgagtcatttaaatcagagtccacatcaccgttacgtcctctccttcttgtgacttgctagaggcgacttcacagctagat 7240  T
Q  115 acatcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattgattcagcatcat 194  Q
    | |||||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||| |||||||||    
T  7241 atatcaaaatcatcaacaataaaacctttcaagtttccttcttcactttg-tgataagtcctctattgatccagcatcat 7319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 7334 - 7368
Alignment:
Q  194 tcatttgttggaatactttgctgatagttgacctt 228  Q
    |||||||||||||||||||| ||||||||||||||    
T  7334 tcatttgttggaatactttgatgatagttgacctt 7368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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