View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11475_high_35 (Length: 243)

Name: NF11475_high_35
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11475_high_35
NF11475_high_35
[»] chr1 (2 HSPs)
chr1 (1-230)||(28610412-28610641)
chr1 (87-227)||(28610643-28610783)
[»] chr5 (1 HSPs)
chr5 (51-227)||(14677093-14677269)
[»] chr8 (6 HSPs)
chr8 (51-221)||(36459916-36460086)
chr8 (28-221)||(33775029-33775222)
chr8 (46-140)||(35000134-35000228)
chr8 (146-221)||(33772995-33773070)
chr8 (40-151)||(33774871-33774982)
chr8 (37-197)||(35000581-35000741)
[»] chr7 (2 HSPs)
chr7 (22-221)||(47989907-47990106)
chr7 (16-221)||(47989679-47989884)
[»] chr4 (11 HSPs)
chr4 (22-140)||(35109745-35109863)
chr4 (22-140)||(35109973-35110091)
chr4 (22-140)||(35110201-35110319)
chr4 (22-140)||(35110429-35110547)
chr4 (22-140)||(35110657-35110775)
chr4 (37-140)||(36294465-36294568)
chr4 (16-140)||(35109511-35109635)
chr4 (37-188)||(36293961-36294112)
chr4 (16-218)||(36294615-36294817)
chr4 (85-185)||(36294192-36294292)
chr4 (22-197)||(35110885-35111060)
[»] chr6 (3 HSPs)
chr6 (34-194)||(24039168-24039328)
chr6 (28-140)||(24039450-24039562)
chr6 (52-119)||(24039926-24039993)
[»] scaffold0971 (1 HSPs)
scaffold0971 (175-219)||(3-47)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28610641 - 28610412
Alignment:
Q  1 acttccagggttatggttttccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610641 acttccagggttatggttttccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatat 28610542  T
Q  101 tgtagtccgcaagagttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggcttt 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610541 tgtaatccgcaagagttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggcttt 28610442  T
Q  201 gacgttgtcgattgtgtcggatgattctac 230  Q
    ||||||||||||||||||||||||||||||    
T  28610441 gacgttgtcgattgtgtcggatgattctac 28610412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 28610783 - 28610643
Alignment:
Q  87 ctctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtct 186  Q
    ||||||||||||||| || |||||||||||||| || ||||| | ||| || || || ||||| |  ||||| || || |||||||| ||||| ||||||    
T  28610783 ctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtct 28610684  T
Q  187 tggattttggctttgacgttgtcgattgtgtcggatgattc 227  Q
    || || || || || ||||||||||||||||| || |||||    
T  28610683 tgaatcttcgccttcacgttgtcgattgtgtcagaagattc 28610643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 14677269 - 14677093
Alignment:
Q  51 gccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcgaagatg 150  Q
    |||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| || ||||| |  |||||||| |||||||||||||||||||||    
T  14677269 gccaccacggagacggagaacaaggtgaagagtggattccttctggatgttgtagtcggcgagagtgcggccgtcttccagctgttttccggcgaagatg 14677170  T
Q  151 agacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcggatgattc 227  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||||||| || |||||||| ||||| || |||||    
T  14677169 agacgttgttggtccggtgggattccttctttgtcttggatcttggctttcacattgtcgatggtgtctgaagattc 14677093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 36460086 - 36459916
Alignment:
Q  51 gccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcgaagatg 150  Q
    ||||||||| ||||| || ||||||||||| ||||| || |||||||| |||||||| || ||||| |  |||||||| | ||| |||||||||||||||    
T  36460086 gccaccacgaagacgtaggacaaggtgaagagtggattccttctggatgttgtagtcggcgagagtgcgtccgtcttccaactgctttccggcgaagatg 36459987  T
Q  151 agacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcgga 221  Q
    |||||||| |||||||||||||||||||| || || ||||| ||||||||||| |||||||||||||||||    
T  36459986 agacgttgctggtcaggtggaattccttccttatcctggatcttggctttgacattgtcgattgtgtcgga 36459916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 33775222 - 33775029
Alignment:
Q  28 agggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtctt 127  Q
    ||||| |||| |||||| ||||| |||||||| |||||||| ||||| ||||| || ||||| |||||||| ||||| || ||||| || |  ||||| |    
T  33775222 agggtcttgataaagatctgcataccaccacgtagacggaggacaagatgaagggtagactccttctggatgttgtaatcagcaagggtgcggccgtcct 33775123  T
Q  128 ctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcgga 221  Q
    | ||||| |||||||||||||| |  |  || |||||  | ||||||||||| || || ||||| |||||||||||||||||||| ||||||||    
T  33775122 cgagctgctttccggcgaagatcaacctctgctggtccaggggaattccttccttatcctggatcttggctttgacgttgtcgatggtgtcgga 33775029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 35000134 - 35000228
Alignment:
Q  46 tgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttcc 140  Q
    ||||| |||||||| ||||| | |||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||| ||||| |||||    
T  35000134 tgcataccaccacgaagacgcaaaacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcgagctgctttcc 35000228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 33773070 - 33772995
Alignment:
Q  146 agatgagacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcgga 221  Q
    ||||||||||||| ||||| || ||||||||||| ||||| ||||| || || || ||||||||||| ||||||||    
T  33773070 agatgagacgttgctggtccgggggaattccttccttgtcctggatcttagccttaacgttgtcgatggtgtcgga 33772995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 33774982 - 33774871
Alignment:
Q  40 aagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttc 139  Q
    ||||| |||||||||||||| |||| ||| ||||||||||| |||   || |||||||| |||||||| || || || | |||||| || || || ||||    
T  33774982 aagatctgcatgccaccacgtagacagaggacaaggtgaagggtgctttccttctggatgttgtagtcagctagggtacgaccgtcctcgagttgctttc 33774883  T
Q  140 cggcgaagatga 151  Q
    ||||||||||||    
T  33774882 cggcgaagatga 33774871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 35000581 - 35000741
Alignment:
Q  37 acaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgtt 136  Q
    ||||| |||||||| ||||||||||||||||| || |  ||||| || ||||| || ||||| || || |||||||| || |  || || || || ||||    
T  35000581 acaaatatttgcataccaccacggagacggagcaccaaatgaagggtagactccttttggatgttataatccgcaagggtacgcccatcctccagttgtt 35000680  T
Q  137 ttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggc 197  Q
    | || || || |||||||| || || |||||||| || ||||| |||||||| || |||||    
T  35000681 tgccagcaaaaatgagacgctgctgatcaggtgggatcccttccttgtcttgaatcttggc 35000741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 47990106 - 47989907
Alignment:
Q  22 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 121  Q
    ||||| |||||||| ||||| || ||||| |||||||| || || | ||| || ||||| || |||||||||||||| || || || || |  ||||| |    
T  47990106 cctgtaagggtttttacaaaaatctgcataccaccacgaagtcgcaaaacgagatgaagagttgactctttctggatgttataatcggccaatgttctgc 47990007  T
Q  122 cgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcgga 221  Q
    | ||||| ||||||||||| || |||||||| |  || ||||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| |||||    
T  47990006 catcttcaagctgttttccagcaaagatgagcctctgctggtcaggtgggatcccttccttgtcttgaatcttggccttgacattgtcaattgtatcgga 47989907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 47989884 - 47989679
Alignment:
Q  16 gttttccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagag 115  Q
    ||||| ||||| || || || |||||||||||||| |||||||| |||||||| || | ||| || |||||||| || ||||| ||||| || ||||| |    
T  47989884 gtttttcctgtgagagtcttcacaaagatttgcatcccaccacgaagacggagcaccaagtggagtgtggactccttttggatgttgtaatctgcaaggg 47989785  T
Q  116 ttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgt 215  Q
    | |  |||||||| ||||| || ||||| || || ||||| || ||||| || || || ||||| |||||||| || ||||| || || ||||| |||||    
T  47989784 tacgcccgtcttccagctgcttgccggcaaaaattagacgctgctggtctggagggatcccttccttgtcttgaatcttggccttaacattgtcaattgt 47989685  T
Q  216 gtcgga 221  Q
     |||||    
T  47989684 atcgga 47989679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 35109745 - 35109863
Alignment:
Q  22 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 121  Q
    ||||| ||||| || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| |    
T  35109745 cctgtaagggtctttacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgc 35109844  T
Q  122 cgtcttctagctgttttcc 140  Q
    | ||||| |||||||||||    
T  35109845 catcttcaagctgttttcc 35109863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 35109973 - 35110091
Alignment:
Q  22 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 121  Q
    ||||| ||||| || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| |    
T  35109973 cctgtaagggtctttacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgc 35110072  T
Q  122 cgtcttctagctgttttcc 140  Q
    | ||||| |||||||||||    
T  35110073 catcttcaagctgttttcc 35110091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 35110201 - 35110319
Alignment:
Q  22 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 121  Q
    ||||| ||||| || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| |    
T  35110201 cctgtaagggtctttacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgc 35110300  T
Q  122 cgtcttctagctgttttcc 140  Q
    | ||||| |||||||||||    
T  35110301 catcttcaagctgttttcc 35110319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 35110429 - 35110547
Alignment:
Q  22 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 121  Q
    ||||| ||||| || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| |    
T  35110429 cctgtaagggtctttacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgc 35110528  T
Q  122 cgtcttctagctgttttcc 140  Q
    | ||||| |||||||||||    
T  35110529 catcttcaagctgttttcc 35110547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 35110657 - 35110775
Alignment:
Q  22 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 121  Q
    ||||| ||||| || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| |    
T  35110657 cctgtaagggtctttacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgc 35110756  T
Q  122 cgtcttctagctgttttcc 140  Q
    | ||||| |||||||||||    
T  35110757 catcttcaagctgttttcc 35110775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 36294568 - 36294465
Alignment:
Q  37 acaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgtt 136  Q
    ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||| ||||| |    
T  36294568 acaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgct 36294469  T
Q  137 ttcc 140  Q
    ||||    
T  36294468 ttcc 36294465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 35109511 - 35109635
Alignment:
Q  16 gttttccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagag 115  Q
    ||||| ||||| || || || ||||| || ||||| ||||| || ||||| |  ||||||||||| || |||||||||||||| ||||| || |||||||    
T  35109511 gttttgcctgtgagtgtcttaacaaaaatctgcataccaccgcgaagacgcaagacaaggtgaagagtcgactctttctggatgttgtaatcagcaagag 35109610  T
Q  116 ttctaccgtcttctagctgttttcc 140  Q
    |||| || ||||| ||||| |||||    
T  35109611 ttctgccatcttcaagctgctttcc 35109635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 36294112 - 36293961
Alignment:
Q  37 acaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgtt 136  Q
    ||||| |||||||| ||||||||||||||||| || |  || || |||||||| |||||||| || || || ||||| || |  || || || ||||| |    
T  36294112 acaaatatttgcataccaccacggagacggagcaccaaatggagggtggactccttctggatgttataatcagcaagggtacgcccatcctccagctgct 36294013  T
Q  137 ttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttg 188  Q
    |||| || || || ||||| || ||||||||||| |||||||| ||||||||    
T  36294012 ttccagcaaaaatcagacgctgctggtcaggtgggattccttccttgtcttg 36293961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 36294817 - 36294615
Alignment:
Q  16 gttttccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagag 115  Q
    ||||| || |||||||| || ||||| || ||||| |||||||| || || |  ||||| ||||| || ||||||||||||||||| || || || ||||    
T  36294817 gtttttccagttagggtcttaacaaaaatctgcataccaccacgaagccgcaagacaagatgaagagtcgactctttctggatattataatcagccagag 36294718  T
Q  116 ttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgt 215  Q
    ||| ||||||||| || || ||||| || || || |  | ||| ||||| || ||||| || || |||||||| || ||||| || || ||||| |||||    
T  36294717 ttcgaccgtcttcaagttgctttccagcaaaaatcaacctttgctggtctgggggaataccctccttgtcttgtatcttggccttcacattgtcaattgt 36294618  T
Q  216 gtc 218  Q
    |||    
T  36294617 gtc 36294615  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 36294292 - 36294192
Alignment:
Q  85 gactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgt 184  Q
    ||||| |||||||| |||||||| || |  ||||| || ||||| ||||||||||| || |||||||| |  || ||||| |||||||| ||||||||||    
T  36294292 gactccttctggatgttgtagtcagccaaggttctgccatcttcaagctgttttccagcaaagatgagcctctgctggtctggtggaataccttctttgt 36294193  T
Q  185 c 185  Q
    |    
T  36294192 c 36294192  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 35110885 - 35111060
Alignment:
Q  22 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 121  Q
    ||||| ||||| || ||||| || ||||| |||||||| || || | ||| || ||||| || |||||||||||||| || || || || |  ||||| |    
T  35110885 cctgtaagggtctttacaaaaatctgcataccaccacgaagtcgcaaaacgagatgaagagttgactctttctggatgttataatcggccaatgttctgc 35110984  T
Q  122 cgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggc 197  Q
    | ||||| ||||||||||| || |||||||| |  || ||||| ||||| || || ||||||||||| || |||||    
T  35110985 catcttcaagctgttttccagcaaagatgagcctctgctggtctggtgggataccctctttgtcttgtatcttggc 35111060  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 24039328 - 24039168
Alignment:
Q  34 ttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagct 133  Q
    ||||| ||||||||||| ||||||||||||||||| || |  || || |||||||| || ||||| ||||| || ||||| || |  || || || ||||    
T  24039328 ttgacgaagatttgcatcccaccacggagacggagcaccaaatggagggtggactccttttggatgttgtaatcagcaagggtacgcccatcctccagct 24039229  T
Q  134 gttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggatttt 194  Q
    | || || || || || ||||| || ||||||||||| |||||||| |||||||| |||||    
T  24039228 gcttgccagcaaaaatcagacgctgctggtcaggtgggattccttccttgtcttgaatttt 24039168  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 24039562 - 24039450
Alignment:
Q  28 agggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtctt 127  Q
    ||||| || ||||| || ||||| |||||||| || || |  ||||||||||| || |||||||| ||||| ||||| || ||||||||||| || ||||    
T  24039562 agggtcttcacaaaaatctgcataccaccacgaaggcgcaagacaaggtgaagagttgactctttttggatgttgtaatcggcaagagttctgccatctt 24039463  T
Q  128 ctagctgttttcc 140  Q
    | ||||| |||||    
T  24039462 caagctgctttcc 24039450  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 24039993 - 24039926
Alignment:
Q  52 ccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttct 119  Q
    |||||||| ||||| | |||||||||||| || ||||||||||| || |||||||| ||||| |||||    
T  24039993 ccaccacgaagacgtaaaacaaggtgaagagtagactctttctgaatgttgtagtcagcaagggttct 24039926  T

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Target: scaffold0971 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 47 - 3
Alignment:
Q  175 ccttctttgtcttggattttggctttgacgttgtcgattgtgtcg 219  Q
    ||||| |||||||| |||||||||||||| |||||||| ||||||    
T  47 ccttccttgtcttgaattttggctttgacattgtcgatggtgtcg 3  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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