View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_high_37 (Length: 242)
Name: NF11475_high_37
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 49179062 - 49179298
Alignment:
| Q |
1 |
ctggagagtttaaaatcttacccaagtttatcagagttcaaatcaatgcagacgaggttccgtttagagcaattcacaatgtcgagtttttagcactcac |
100 |
Q |
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| T |
49179062 |
ctggagagtttaaaatcttacccaagttgatcagagttcaaatcaatgcagacgaggttccgtttagagcaattcacaatgtcgagtttttagcactcac |
49179161 |
T |
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| Q |
101 |
tgtaagttaagttaccaatgaattattgatgatattgatatataatgagttgaggttgagtttcatttttattttaattgtagatgaggagcaggcttcc |
200 |
Q |
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| T |
49179162 |
tgtaagttaagttaccaatgaattatttat--tgatgatatataatgagtcgatgttgagtttcatttttattttaattgtagatgagaagcaggcttcc |
49179259 |
T |
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| Q |
201 |
tgatccggaaatcaattcctataacacacgctctcctat |
239 |
Q |
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||||||||| |||||||||||||||| || ||||||||| |
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| T |
49179260 |
tgatccggagatcaattcctataacatactctctcctat |
49179298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 49171059 - 49170945
Alignment:
| Q |
3 |
ggagagtttaaaatcttacccaagtttatcagagttcaaatcaatgcagacgaggttccgtttagagcaattcacaatgtcgagtttttagcactcactg |
102 |
Q |
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|||||||||||||||||| ||||||| || |||| ||||||||| | ||| |||||||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
49171059 |
ggagagtttaaaatcttatccaagttgattagagccaaaatcaatgtatgcgatgttccgtttagagcaattcataatgtcgaatttttatcactcactg |
49170960 |
T |
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| Q |
103 |
taagttaagttacca |
117 |
Q |
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||||||| ||||||| |
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| T |
49170959 |
taagttacgttacca |
49170945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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