View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11475_high_44 (Length: 236)
Name: NF11475_high_44
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_44 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6126016 - 6126251
Alignment:
| Q |
1 |
atgagaaatatacttcattcaagaatggaaaaatgttggaatcaaatgaactttcactcaaccgcatcacggaagacacaatactagtaataaagagtgt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6126016 |
atgagaaatatatttcattcaagaatggaaaaatgttggaatcaaatgaactttcactcaaccgcatcacggaagacacaatactagtaataaagagtgt |
6126115 |
T |
|
| Q |
101 |
tgcattgtacaatgtactagtagataaacgttgttccgaaattcatagctacaattatgatagtgttgtggtatgtttaccaggaagtagaattccaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6126116 |
tgcattgtacaatgtactagtagataaacgttgttccgaaattcatagctacaattatgatagtgttgtggtatgtttaccaggaagtagaattccaagc |
6126215 |
T |
|
| Q |
201 |
cagctcaaatacaaaacatcagattccaaactaact |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6126216 |
cagctcaaatacaaaacatcagattccaaactaact |
6126251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 6172339 - 6172104
Alignment:
| Q |
1 |
atgagaaatatacttcattcaagaatggaaaaatgttggaatcaaatgaactttcactcaaccgcatcacggaagacacaatactagtaataaagagtgt |
100 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
6172339 |
atgagaaatatatttcattcaataatggaaaaatgttggaatcaaatgacctgtcactcaattgcatcacggaagacacaattctagttatgaagagtgt |
6172240 |
T |
|
| Q |
101 |
tgcattgtacaatgtactagtagataaacgttgttccgaaattcatagctacaattatgatagtgttgtggtatgtttaccaggaagtagaattccaagc |
200 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
6172239 |
tgcattgtataatgtactagtacataaacgttgttcagaaactcatagctacaattatgatagtgttgtggtgtatttaccaggaagcagaattccaagc |
6172140 |
T |
|
| Q |
201 |
cagctcaaatacaaaacatcagattccaaactaact |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6172139 |
aagctcaaatacaaaacatcagattccaaactaact |
6172104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University