View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11475_high_47 (Length: 229)
Name: NF11475_high_47
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_47 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 12670102 - 12669880
Alignment:
| Q |
7 |
agtactgctcctgccattctttcttcattctctgcaatcactaattaagagtatgattcatatgatacaggtcccaataaggaaaatctcatgcatgtga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12670102 |
agtactgctcctgccattctttcttcattctctgcaatcactaattaagagtatgattcatatgatacaggtcccaataaggaaaatctcatgcatgtga |
12670003 |
T |
|
| Q |
107 |
tgagtactagtaggagcaagttcatgaccaccatggtcaaccctttgagattctgtgacaaaaaagaagaagacattggtggctctgaaattgtagctga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12670002 |
tgagtactagtaggagcaagttcatgaccaccatggtcaaccctttgagattctgtgacaaaaaagaagaagacattggtggctctgaaattgtagctga |
12669903 |
T |
|
| Q |
207 |
caattcttcagcaacttcagcat |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
12669902 |
caattcttcagcaacttcagcat |
12669880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University