View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11475_high_48 (Length: 228)

Name: NF11475_high_48
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11475_high_48
NF11475_high_48
[»] chr4 (3 HSPs)
chr4 (16-175)||(30684939-30685098)
chr4 (23-105)||(28467729-28467811)
chr4 (19-105)||(28486212-28486299)
[»] chr2 (1 HSPs)
chr2 (125-168)||(20135565-20135608)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 30685098 - 30684939
Alignment:
Q  16 cagaaatatcatcttcccttgccttcttagaagaagtctcttcactgcatttcgagtcattcaatacaaaaatgtgtcaaacatatataagtcggatccg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30685098 cagaaatatcatcttcccttgccttcttagaagaagtctcttcactgcatttcgagtcattcaatacaaaaatgtgtcaaacatatataagtcggatccg 30684999  T
Q  116 gatttgctaactttaaggcaggaaaatcacggtgactttgtgtctatttctcttatattg 175  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30684998 gatttgctaactttaaggcaggaaaatcacggtgactttgtgtttatttctcttatattg 30684939  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 28467811 - 28467729
Alignment:
Q  23 atcatcttcccttgccttcttagaagaagtctcttcactgcatttcgagtcattcaatacaaaaatgtgtcaaacatatataa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  28467811 atcatcttcccttgccttcttagaagaagtctcttcactgcatttagagtcattcaatacaaaaatgtgtcgaacatatataa 28467729  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 28486299 - 28486212
Alignment:
Q  19 aaatatcatcttcccttgccttcttagaagaagtctcttcactgcatttcgagtcattcaataca-aaaatgtgtcaaacatatataa 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  28486299 aaatatcatcttcccctgccttcttagaagaagtctcttcactgcatttagaatcattcaatacaaaaaatgtgtcaaacatatataa 28486212  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 20135608 - 20135565
Alignment:
Q  125 actttaaggcaggaaaatcacggtgactttgtgtctatttctct 168  Q
    |||||||||||||||| | |||||||||| ||||||||||||||    
T  20135608 actttaaggcaggaaagttacggtgacttagtgtctatttctct 20135565  T

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