View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11475_high_56 (Length: 217)
Name: NF11475_high_56
Description: NF11475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11475_high_56 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 42791952 - 42792169
Alignment:
| Q |
1 |
caacaacataattccaagaatagcaaattgtcactaacttttttatgttggtggctggagtttgaaacattgtcaatgttaactgagctaagctc-acaa |
99 |
Q |
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| T |
42791952 |
caacaacataattccaagaatagcaaattttcactaacttttttttgttggtggccggagtttgaaacattgtcaatgccaactgagctaagctccacaa |
42792051 |
T |
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| Q |
100 |
ggatgtaaattttcactaacaatataacagtagcacaattccggaaatcacaaataattatatgacaagattaatattaattccagtggttatgtactgt |
199 |
Q |
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| T |
42792052 |
ggacgtaaattttcactaactatataacagtagcacaattccggaaatcacaaataattatatgacaagattaatattaattccagtggttatgtaatgt |
42792151 |
T |
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| Q |
200 |
tcaaatagcttaaattaa |
217 |
Q |
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| T |
42792152 |
tccaatagcttaaattaa |
42792169 |
T |
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